Hg_chrom4_TN10mRNA_8864
Organism: Heterodera glycines Gene Locus: chr4:12480641-12484107 Feature type: polypeptideProtein Sequence
Length: 268
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.824 | 1.388 | 0.611 | 0.901 | 0.746 | 1.914 | 0.666 | 3.172 | 0.912 | 1.412 | 0.452 | 1.536 | 0.933 | 1.22 | 1.523 | 1.119 | 0.734 | 0.735 | 1.435 | 0.219 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8329
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.393
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
FKVK
|
59-87
|
0.997
|
46-76
|
0.931
|
— | — |
0.000
|
— | — |
0.204
|
0.395
|
0.013
|
0.761
|
0.185
|
0.192
|
0.115
|
0.072
|
0.217
|
0.057
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009065
|
1.000
|
1.000
|
Hsc_gene_4684.t1
|
Hsc_gene_4684.t1
|
— | — |
KAI1724297.1 CRE-GLB-28 protein [Ditylenchus destructor]
|
No
|
0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0019825|GO:0020037
|
— |
IPR000971+109-225+|IPR009050+81-229+|IPR012292+85-233+|IPR044399+94-227+|IPR050532+60-235+
|
— |
PF00042+109-225+Globin
|
— |
PTHR46458+60-235+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-69;267-268
|
1.000
|
70-266
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.905
|
30295.450
|
9.137
|
15.500
|
24.627
|
12.313
|
50.373
|
49.627
|
16.791
|
7.836
|
48.134
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
blue
|
297.642
|
32.043
|
187.482
|
61.163
|
29.414
|
16.651
|
37.935
|
91.604
|
13.432
|
1121.001
|
646.328
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.318
|
0.796
|
-1.506
|
-1.090
|
— |
1.197
|
2.361
|
-1.131
|
-6.524
|
— |
-4.949
|
— | — |
No JSON data available for plots.