Hg_chrom4_TN10mRNA_8869
Organism: Heterodera glycines Gene Locus: chr4:12509528-12533615 Feature type: polypeptideProtein Sequence
Length: 2,040
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.764 | 1.22 | 0.722 | 0.642 | 1.005 | 1.156 | 0.776 | 1.348 | 1.481 | 1.179 | 0.579 | 1.759 | 1.865 | 0.839 | 1.19 | 1.092 | 0.836 | 0.943 | 0.867 | 0.995 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8334
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RRGVSSYWNRKMRRLRV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.058
|
0.104
|
0.010
|
0.157
|
0.191
|
0.263
|
0.127
|
0.004
|
0.920
|
0.037
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000418
|
1.000
|
7.000
|
Hsc_gene_11564.t1;Hsc_gene_11564.t2;Hsc_gene_11564.t3;Hsc_gene_4689.t1;Hsc_gene_4689.t2;Hsc_gene_4689.t3;Hsc_gene_4689.t4
|
Hsc_gene_11565.t1;Hsc_gene_11566.t1;Hsc_gene_4689.t1;Hsc_gene_4689.t2;Hsc_gene_4689.t3;Hsc_gene_4689.t4
|
— |
C9D7C2.1 Voltage-dependent calcium channel type A subunit alpha-1 [Apis mellifera]
|
QRX85587.1 voltage-dependent calcium channel non-L type alpha-1 [Heterodera elachista]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005216|GO:0005245|GO:0005509|GO:0005891|GO:0006811|GO:0016020|GO:0055085|GO:0070588
|
GO:0008150_0.984|GO:0051179_0.960|GO:0006810_0.959|GO:0051234_0.959|GO:0005575_0.951|GO:0071944_0.951|GO:0110165_0.951|GO:0005886_0.950|GO:0016020_0.950|GO:0009987_0.939|GO:0006811_0.897|GO:0003674_0.895|GO:0005215_0.895|GO:0005216_0.895|GO:0015075_0.895|GO:0015267_0.895|GO:0022803_0.895|GO:0022857_0.895|GO:0034220_0.895|GO:0055085_0.895|GO:0006812_0.872|GO:0030001_0.872|GO:0022836_0.856|GO:0005261_0.851|GO:0008324_0.851|GO:0098655_0.851|GO:0098660_0.829|GO:0015318_0.812|GO:0098662_0.795|GO:0022890_0.791|GO:0046873_0.791|GO:0050789_0.772|GO:0065007_0.772|GO:0005244_0.752|GO:0022832_0.752|GO:0022843_0.735|GO:0006816_0.734|GO:0070588_0.695|GO:0005262_0.667|GO:0015085_0.667|GO:0050794_0.661|GO:0030054_0.646|GO:0005245_0.644|GO:0007154_0.627|GO:0045202_0.624|GO:0023052_0.623|GO:0032501_0.607|GO:0050896_0.589|GO:0005622_0.563|GO:0098590_0.543|GO:0003008_0.531|GO:0007267_0.524
|
IPR002048+1449-1484+|IPR002077+236-251_349-366_388-412_699-725_1130-1150_1299-1313_1347-1359+|IPR005821+116-397_538-774_858-1137_1184-1443+|IPR014873+1517-1595_1573-1607+|IPR027359+105-230_528-647_849-977_1174-1295+|IPR031649+1453-1506+|IPR050599+68-785+
|
SM01062+1573-1607+
|
PF00520+116-397_538-774_858-1137_1184-1443+Ion_transport_protein|PF08763+1517-1595+Voltage_gated_calcium_channel_IQ_domain|PF16905+1453-1506+Voltage-dependent_L-type_calcium_channel,_IQ-associated
|
G3DSA:1.10.238.10:FF:000063+1437-1561+Voltage-dependent_N-type_calcium_channel_subunit_alpha|G3DSA:1.10.287.70:FF:000007+310-392+Voltage-dependent_L-type_calcium_channel_subunit_alpha|G3DSA:1.10.287.70:FF:000023+1301-1446+Voltage-dependent_R-type_calcium_channel_subunit_alpha|G3DSA:1.10.287.70:FF:000059+653-805+Voltage-dependent_N-type_calcium_channel_subunit_alpha|G3DSA:1.20.120.350:FF:000001+528-650+Voltage-dependent_L-type_calcium_channel_subunit_alpha|G3DSA:1.20.120.350:FF:000011+849-977+Voltage-dependent_N-type_calcium_channel_subunit_alpha|G3DSA:1.20.120.350:FF:000013+1173-1293+Voltage-dependent_N-type_calcium_channel_subunit_alpha|G3DSA:1.20.120.350:FF:000043+104-230+Voltage-dependent_L-type_calcium_channel_subunit_alpha
|
PTHR45628+68-785+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3;447-491;1626-2040
|
2.000
|
4-446;492-1625
|
3jbr_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.724
|
230949.320
|
7.201
|
20.500
|
22.353
|
13.922
|
44.853
|
55.147
|
12.353
|
10.000
|
47.500
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1579.374
|
1459.424
|
2434.552
|
1153.555
|
422.181
|
306.923
|
457.505
|
1409.190
|
1337.967
|
3040.038
|
2310.579
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.509
|
-0.477
|
-0.969
|
-1.482
|
-0.446
|
0.586
|
2.091
|
-1.480
|
— | — |
-2.595
|
— | — |
No JSON data available for plots.