Hg_chrom4_TN10mRNA_8874
Organism: Heterodera glycines Gene Locus: chr4:12547372-12552970 Feature type: polypeptideProtein Sequence
Length: 581
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.021 | 0.801 | 0.908 | 0.415 | 1.033 | 1.501 | 0.697 | 2.065 | 0.841 | 1.489 | 0.6 | 1.924 | 1.578 | 0.695 | 1.194 | 0.959 | 0.79 | 0.756 | 1.721 | 1.063 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8339
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.947
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— | — |
5-25
|
1.000
|
— | — | — | — |
0.000
|
— | — |
0.160
|
0.084
|
0.002
|
0.156
|
0.568
|
0.216
|
0.828
|
0.030
|
0.062
|
0.252
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002150
|
3.000
|
1.000
|
Hsc_gene_4691.t1
|
Hsc_gene_4691.t1
|
— |
Q9UKM7.2 Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase [Homo sapiens]
|
KAI1724290.1 glycosyl hydrolase family 47 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004571|GO:0005509|GO:0005975|GO:0016020
|
GO:0008150_0.885|GO:0005575_0.824|GO:0110165_0.824|GO:0003674_0.774|GO:0005622_0.737|GO:0016020_0.734|GO:0008152_0.714|GO:0071944_0.704|GO:0005737_0.702|GO:0005886_0.690|GO:0003824_0.684|GO:0044238_0.684|GO:0043226_0.655|GO:0043170_0.642|GO:0043227_0.639|GO:0043229_0.639|GO:0019538_0.629|GO:0043231_0.621|GO:0016787_0.597|GO:0009987_0.581|GO:0005773_0.563|GO:0016798_0.558|GO:0004553_0.557|GO:0012505_0.551|GO:0004559_0.549|GO:0015923_0.549
|
IPR001382+117-137_117-578_149-163_186-204_226-245_323-340_387-403_478-502_541-561+|IPR012341+107-580+|IPR036026+105-578+|IPR050749+13-578+
|
— |
PF01532+117-578+Glycosyl_hydrolase_family_47
|
G3DSA:1.50.10.10:FF:000010+106-581+alpha-1,2-Mannosidase
|
PTHR11742+13-578+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-581
|
8pko_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.500
|
66548.740
|
6.785
|
4.000
|
25.129
|
15.663
|
45.955
|
54.045
|
13.941
|
11.188
|
44.406
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
magenta
|
375.263
|
525.659
|
488.933
|
510.140
|
486.060
|
499.038
|
744.434
|
427.128
|
234.735
|
85.204
|
149.288
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.333
|
-0.180
|
0.169
|
— | — |
0.586
|
-0.329
|
0.942
|
— | — | — | — | — |
No JSON data available for plots.