Hg_chrom4_TN10mRNA_8875
Organism: Heterodera glycines Gene Locus: chr4:12553573-12558683 Feature type: polypeptideProtein Sequence
Length: 581
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.781 | 1.401 | 0.939 | 0.178 | 1.348 | 1.633 | 0.676 | 0.775 | 1.721 | 0.791 | 1.278 | 1.316 | 1.482 | 0.927 | 1.019 | 1.131 | 1.129 | 0.522 | 0.265 | 0.557 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8340
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— |
KKKKQRIERR,KKQFVLTPVFERTHEKKRT
|
— | — | — | — |
1-21
|
0.890
|
1.000
|
0.000
|
0.000
|
0.185
|
0.157
|
0.060
|
0.160
|
0.065
|
0.021
|
0.062
|
0.196
|
0.210
|
0.916
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002151
|
2.000
|
2.000
|
Hsc_gene_4692.t1;Hsc_gene_4692.t2
|
Hsc_gene_4692.t1;Hsc_gene_4692.t2
|
— | — |
CAD2164204.1 unnamed protein product [Meloidogyne enterolobii]
|
No
|
0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
83-170;310-581
|
2.000
|
1-82;171-309
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.773
|
65408.670
|
7.865
|
5.500
|
28.227
|
9.122
|
55.422
|
44.578
|
14.974
|
13.253
|
47.160
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
197.400
|
165.855
|
72.837
|
71.367
|
306.590
|
729.990
|
93.589
|
229.349
|
82.005
|
176.032
|
135.735
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.415
|
-1.353
|
— |
2.071
|
1.268
|
-2.956
|
-1.775
|
-1.153
|
— | — | — | — |
6.159
|