SCN Proteipedia

Hg_chrom4_TN10mRNA_8877

Organism: Heterodera glycines Gene Locus: chr4:12568323-12584730 Feature type: polypeptide

Protein Sequence

Length: 1,597

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.099	0.801	1.036	0.907	1.158	0.995	0.678	0.783	0.988	0.998	1.186	1.105	0.974	1.156	1.303	1.145	0.873	0.892	1.493	0.608	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_8342	—	—	1.333	2.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	3.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	20-Egg_ppJ2_pJ2_J3_J4	0.971

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	KRAR,KKLFNKNRFIRAKRKET,RKEKAQLLPVAPVVKAKKY	48-88	0.983	40-60	0.999	—	—	0.003	—	—	0.555	0.065	0.039	0.604	0.085	0.029	0.038	0.006	0.244	0.049

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000578	1.000	6.000	Hsc_gene_1705.t1;Hsc_gene_1705.t2;Hsc_gene_1708.t1;Hsc_gene_1708.t2;Hsc_gene_1708.t3;Hsc_gene_23314.t1	—	—	Q23551.3 Twitchin [Caenorhabditis elegans]	KAI3421286.1 IG-like protein, partial [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0005515\|GO:0005524\|GO:0006468	GO:0005575_0.908\|GO:0110165_0.908\|GO:0008150_0.863\|GO:0005622_0.824\|GO:0003674_0.817\|GO:0009987_0.755\|GO:0043226_0.734\|GO:0043229_0.731\|GO:0005488_0.625\|GO:0065007_0.582\|GO:0005737_0.568\|GO:0050789_0.566\|GO:0071840_0.558\|GO:0016043_0.557\|GO:0016020_0.528\|GO:0006996_0.502	IPR000719+1270-1597+\|IPR003599+366-450_691-777+\|IPR003961+572-665_574-680_575-668_584-671_902-971_902-977_903-977_983-1069_985-1083_986-1072_990-1073+\|IPR007110+366-446+\|IPR011009+1261-1485+\|IPR013087+233-255_233-260_235-255_261-283+\|IPR013098+374-437_693-776+\|IPR013783+370-467_567-678_679-792_894-982_983-1083+\|IPR017441+1276-1300+\|IPR024604+1499-1588+\|IPR036116+564-673_901-1073+\|IPR036179+375-451_692-785+\|IPR036236+231-283+	SM00060+572-665_902-971_983-1069+\|SM00355+233-255_261-283+\|SM00409+366-450_691-777+\|SM01331+1499-1588+	PF00041+584-671_903-977_990-1073+Fibronectin_type_III_domain\|PF07679+374-437_693-776+Immunoglobulin_I-set_domain\|PF12330+1232-1562+Haspin_like_kinase_domain	G3DSA:2.60.40.10:FF:000031+684-778+Myosin-binding_protein_C,_slow_type	PTHR24419+1111-1563+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	424-594;774-880;1096-1180	4.000	1-423;595-773;881-1095;1181-1597	8q6t_P	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.810	177784.400	8.567	37.500	28.428	9.080	49.092	50.908	15.780	12.649	52.160

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	2512.303	5779.291	4698.079	3324.350	2598.227	3239.132	2000.719	1818.863	825.787	1574.988	1253.902

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.527	-0.935	-0.391	-0.387	0.333	-0.686	-0.939	0.279	—	—	—	—	—

No JSON data available for plots.

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