Hg_chrom4_TN10mRNA_8883
Organism: Heterodera glycines Gene Locus: chr4:12615022-12616993 Feature type: polypeptideProtein Sequence
Length: 227
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.82 | 0.512 | 1.121 | 0.456 | 1.836 | 0.565 | 0.577 | 1.322 | 0.685 | 1.429 | 1.602 | 1.296 | 1.101 | 0.593 | 1.978 | 0.818 | 1.083 | 0.667 | 0.678 | 0.518 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8348
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.936
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKRK,QRKRAVEKESIERK,KKLAFPNTALLHGRMKEK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.826
|
0.125
|
0.035
|
0.231
|
0.085
|
0.025
|
0.043
|
0.002
|
0.028
|
0.078
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001862
|
3.000
|
1.000
|
Hsc_gene_4978.t1
|
— | — |
Q9ESV0.2 ATP-dependent RNA helicase DDX24 [Mus musculus]
|
KAI1727066.1 DEAD/DEAH box helicase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.906|GO:0110165_0.906|GO:0005622_0.863|GO:0043226_0.754|GO:0008150_0.746|GO:0016020_0.739|GO:0043229_0.734|GO:0043227_0.659|GO:0009987_0.657|GO:0043231_0.630|GO:0003674_0.575|GO:0005634_0.567|GO:0008152_0.539|GO:0044238_0.537|GO:0043170_0.533|GO:0006139_0.517|GO:0009058_0.508|GO:0044237_0.506|GO:0043228_0.502|GO:0043232_0.502
|
IPR001650+1-142_10-100_19-101+|IPR027417+9-225_13-152+|IPR050079+22-220+
|
SM00490+19-101+
|
PF00271+10-100+Helicase_conserved_C-terminal_domain
|
— |
PTHR47959+22-220+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
173-227
|
1.000
|
1-172
|
5ivl_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.670
|
26311.070
|
9.739
|
10.000
|
40.088
|
9.251
|
56.828
|
43.172
|
22.907
|
17.181
|
41.410
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
715.009
|
386.724
|
216.835
|
157.780
|
112.555
|
91.872
|
49.108
|
106.135
|
1866.461
|
1307.942
|
1547.308
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.065
|
-1.431
|
-0.350
|
-0.521
|
— |
-0.892
|
— |
-0.967
|
— |
-3.378
|
-3.467
|
— | — |
No JSON data available for plots.