Hg_chrom4_TN10mRNA_8884
Organism: Heterodera glycines Gene Locus: chr4:12617184-12618140 Feature type: polypeptideProtein Sequence
Length: 124
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.407 | 1.125 | 0.44 | 1.39 | 0.538 | 0.62 | 1.248 | 0.806 | 1.792 | 0.981 | 0.489 | 1.423 | 1.568 | 1.086 | 0.329 | 1.613 | 1.322 | 0.611 | 1.241 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_8349
|
— | — |
1.111
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.753
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — |
15-43
|
0.846
|
— | — |
0.000
|
— | — |
0.698
|
0.152
|
0.244
|
0.487
|
0.069
|
0.047
|
0.026
|
0.050
|
0.073
|
0.037
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001862
|
3.000
|
1.000
|
Hsc_gene_4978.t1
|
— | — | — |
KAI1728152.1 DEAD/DEAH box helicase domain-containing protein [Ditylenchus destructor]
|
No
|
0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003724|GO:0005524
|
GO:0005575_0.862|GO:0110165_0.843|GO:0005622_0.720|GO:0016020_0.663|GO:0008150_0.637|GO:0043226_0.617|GO:0043229_0.609|GO:0003674_0.589|GO:0043227_0.570|GO:0043231_0.564|GO:0009987_0.531
|
IPR011545+46-87+|IPR014014+22-50+|IPR027417+1-104_16-90+|IPR050079+12-86+
|
— |
PF00270+46-87+DEAD/DEAH_box_helicase
|
— |
PTHR47959+12-86+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-124
|
8ia0_CE
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.905
|
12723.560
|
6.422
|
0.000
|
12.097
|
8.871
|
38.710
|
61.290
|
6.452
|
5.645
|
62.903
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightgreen
|
193.735
|
131.069
|
95.986
|
93.992
|
57.239
|
54.431
|
34.191
|
64.426
|
229.165
|
476.466
|
370.480
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.680
|
-0.617
|
— |
-0.748
|
— |
-0.661
|
— |
-0.771
|
— | — | — | — | — |
No JSON data available for plots.