SCN Proteipedia

Hg_chrom4_TN10mRNA_8885

Organism: Heterodera glycines Gene Locus: chr4:12618850-12636847 Feature type: polypeptide

Protein Sequence

Length: 644

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.029	1.119	0.678	0.803	1.139	1.473	0.629	1.475	0.863	1.364	0.871	1.553	1.121	0.747	1.711	1.087	1.12	0.565	0.717	0.502	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_8350	—	—	1.111	1.000	1.000	1.000	1.000	1.000	2.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	18-ppJ2_pJ2_J3_J4_Male	0.981

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRGEQQQKKRGSSRRRTT,KKRGSSRRRTTTTKRRCFR	37-69	0.982	61-81	0.997	—	—	0.000	—	—	0.650	0.119	0.101	0.322	0.072	0.017	0.088	0.057	0.197	0.253

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003975	2.000	1.000	Hsc_gene_23049.t1	—	—	Q875S9.1 Palmitoyltransferase AKR1 [Lachancea kluyveri NRRL Y-12651]	WGZ06815.1 ankyrin repeats (3 copies) [Trichomonas stableri]	No	-0.030

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0005575_0.932\|GO:0110165_0.932\|GO:0005622_0.867\|GO:0043226_0.829\|GO:0043229_0.811\|GO:0008150_0.741\|GO:0005737_0.730\|GO:0009987_0.702\|GO:0016020_0.692\|GO:0065007_0.670\|GO:0050789_0.655\|GO:0003674_0.650\|GO:0050794_0.636\|GO:0043227_0.590\|GO:0071944_0.569\|GO:0043231_0.564\|GO:0005886_0.550\|GO:0051179_0.544\|GO:0051234_0.533\|GO:0006810_0.531\|GO:0051641_0.502	IPR002110+373-402_373-405_378-446_406-435_406-438_469-498_478-523_502-532+\|IPR036770+319-454_371-524_455-530+\|IPR051637+312-525+	SM00248+373-402_406-435_469-498_502-532+	PF12796+378-446+Ankyrin_repeats_(3_copies)\|PF13637+478-523+Ankyrin_repeats_(many_copies)	—	PTHR24180+312-525+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	190-300;557-644	2.000	1-189;301-556	6d67_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.811	72735.850	9.839	32.500	27.640	9.627	52.640	47.360	17.081	10.559	47.050

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	purple	green	1671.130	144.096	221.784	232.599	200.737	316.683	101.983	211.326	2645.079	4791.434	3871.568

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.393	0.554	0.177	-0.245	0.673	-1.627	-0.684	-0.913	—	-3.340	-4.282	—	—

No JSON data available for plots.

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