SCN Proteipedia

Hg_chrom5_TN10mRNA_10001

Organism: Heterodera glycines Gene Locus: chr5:5416856-5419153 Feature type: polypeptide

Protein Sequence

Length: 568

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.757	1.269	1.248	0.364	1.086	1.129	0.629	1.937	1.448	1.166	0.72	0.725	0.88	1.151	1.258	1.081	1.154	1.014	0.677	0.414	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9411	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	0.996

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.316	0.194	0.019	0.692	0.108	0.375	0.183	0.081	0.499	0.034

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009615	1.000	1.000	Hsc_gene_6981.t1	Hsc_gene_6981.t1	—	H2L099.1 Germinal center kinase 1 [Caenorhabditis elegans]	XP_020307506.1 STE/STE20/YSK protein kinase [Loa loa];EJD76726.1 STE/STE20/YSK protein kinase [Loa loa]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0005524\|GO:0006468	GO:0008150_0.958\|GO:0009987_0.899\|GO:0065007_0.857\|GO:0050789_0.853\|GO:0050794_0.836\|GO:0005575_0.814\|GO:0110165_0.807\|GO:0003674_0.748\|GO:0005622_0.730\|GO:0003824_0.719\|GO:0140096_0.719\|GO:0016740_0.715\|GO:0016772_0.709\|GO:0016301_0.703\|GO:0016773_0.700\|GO:0004672_0.697\|GO:0050896_0.676\|GO:0051716_0.668\|GO:0007154_0.634\|GO:0023052_0.632\|GO:0005737_0.626\|GO:0007165_0.619\|GO:0032502_0.577\|GO:0048856_0.574\|GO:0016020_0.566\|GO:0016043_0.534\|GO:0035556_0.534\|GO:0071840_0.534\|GO:0048518_0.529\|GO:0008152_0.522\|GO:0019538_0.522\|GO:0043170_0.522\|GO:0044238_0.522\|GO:0048522_0.512\|GO:0036211_0.505\|GO:0043412_0.505\|GO:0004674_0.504\|GO:0006793_0.502\|GO:0006796_0.502\|GO:0044237_0.502	IPR000719+7-258_8-258+\|IPR011009+7-259+\|IPR017441+13-36+\|IPR046409+488-558+\|IPR048288+499-542+\|IPR050629+2-462+	SM00220+7-258+	PF00069+8-258+Protein_kinase_domain\|PF20929+499-542+Programmed_cell_death_protein_10,_dimerisation_domain	G3DSA:1.10.510.10:FF:000207+4-290+serine/threonine-protein_kinase_dst1_isoform_X1	PTHR48012+2-462+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	325-568	1.000	1-324	7z4v_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.603	63322.180	6.283	-3.000	28.169	9.331	52.641	47.359	14.789	13.380	52.465

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	2221.770	6952.420	1558.527	1494.582	1566.835	1395.268	2600.659	2124.818	1173.296	2205.355	1763.044

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-2.387	-2.355	—	—	-0.153	0.909	0.503	0.433	—	—	—	—	—

No JSON data available for plots.

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