Hg_chrom5_TN10mRNA_10002
Organism: Heterodera glycines Gene Locus: chr5:5419448-5422699 Feature type: polypeptideProtein Sequence
Length: 747
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.794 | 0.809 | 0.998 | 0.462 | 1.986 | 0.927 | 0.797 | 0.803 | 0.654 | 1.158 | 2.191 | 1.417 | 0.781 | 0.541 | 1.694 | 0.708 | 0.746 | 0.73 | 0.927 | 0.354 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9412
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKVTYQVVTKGKRG,RRLYKKAGSNEKRKVT,KKVAEAKARKRQRRIRRM,RKRQRRIRRMEKAKKKAE,KKRKRKLLKAKRNLEERKK,KRKRKLLKAKRNLEERKKL,RKRKLLKAKRNLEERKKLK,KRKLLKAKRNLEERKKLKM,KGKRGSMSRPDGHYRLVDKRMKKDMRKQSKTGTKRTNKAKANTFGRKGKMREKSQNPKERMNSERKDGPKQKRKNGKNGGTRWMGGEKRKSGKPNGTRMGGERKRKR
|
24-45
|
0.996
|
— | — | — | — |
0.000
|
— | — |
0.844
|
0.228
|
0.051
|
0.192
|
0.067
|
0.030
|
0.055
|
0.005
|
0.043
|
0.077
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009616
|
1.000
|
1.000
|
Hsc_gene_6979.t1
|
Hsc_gene_6979.t1;Hsc_gene_6980.t1
|
— |
Q5RJT2.1 pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3 [Rattus norvegicus]
|
XP_042933249.1 rRNA methyltransferase, putative [Brugia malayi];CRZ25681.1 Bm13809 [Brugia malayi];VIO91905.1 rRNA methyltransferase, putative [Brugia malayi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0001510|GO:0005634|GO:0006364|GO:0008168|GO:0008649|GO:0031167|GO:0032259
|
GO:0008150_0.896|GO:0005575_0.849|GO:0110165_0.847|GO:0005622_0.823|GO:0003674_0.742|GO:0043226_0.726|GO:0008152_0.720|GO:0009987_0.720|GO:0043170_0.720|GO:0043229_0.709|GO:0044238_0.705|GO:0006139_0.703|GO:0016020_0.698|GO:0090304_0.694|GO:0016070_0.680|GO:0043227_0.642|GO:0043412_0.608|GO:0043231_0.600|GO:0001510_0.591|GO:0009451_0.591|GO:0032259_0.591|GO:0043414_0.591|GO:0003824_0.581|GO:0140640_0.581|GO:0009058_0.564|GO:0009059_0.564|GO:0010467_0.564|GO:0044237_0.564|GO:0044249_0.564|GO:0140098_0.559|GO:0016740_0.558|GO:0043228_0.550|GO:0043232_0.550|GO:0008168_0.544|GO:0016741_0.544|GO:0008173_0.540|GO:0034654_0.533|GO:0141187_0.527|GO:0006396_0.526|GO:0032774_0.526|GO:0005634_0.505
|
IPR002877+24-200+|IPR012920+459-670+|IPR015507+8-201+|IPR024576+242-400+|IPR028589+1-675+|IPR029063+21-206_23-200+|IPR050082+9-209+
|
— |
PF01728+24-200+FtsJ-like_methyltransferase|PF07780+459-670+Spb1_C-terminal_domain|PF11861+242-400+Ribosomal_RNA_methyltransferase_Spb1,_DUF3381
|
G3DSA:3.40.50.150:FF:000004+21-207+AdoMet-dependent_rRNA_methyltransferase_SPB1
|
PTHR10920+9-209+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
330-747
|
1.000
|
1-329
|
8v87_w
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.588
|
85931.360
|
10.246
|
46.000
|
41.767
|
6.827
|
58.367
|
41.633
|
24.364
|
17.403
|
40.964
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
5385.153
|
7294.766
|
5443.420
|
5437.300
|
4767.636
|
3504.168
|
2976.889
|
2908.694
|
9075.079
|
4628.910
|
6534.411
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.653
|
-0.561
|
0.108
|
-0.222
|
-0.429
|
-0.224
|
-0.374
|
— | — | — | — | — | — |
No JSON data available for plots.