Hg_chrom5_TN10mRNA_10004
Organism: Heterodera glycines Gene Locus: chr5:5423457-5430808 Feature type: polypeptideProtein Sequence
Length: 1,517
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.935 | 1.027 | 0.827 | 0.727 | 0.879 | 1.031 | 0.84 | 1.22 | 1.318 | 1.301 | 0.699 | 1.629 | 1.611 | 1.027 | 1.036 | 1.055 | 0.832 | 0.979 | 1.217 | 0.717 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9414
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.597
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— |
KRRR,RRRK,KKRKLE
|
17-37
|
0.851
|
— | — | — | — |
0.000
|
— | — |
0.109
|
0.106
|
0.009
|
0.141
|
0.330
|
0.622
|
0.547
|
0.016
|
0.615
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009618
|
1.000
|
1.000
|
Hsc_gene_6977.t1
|
Hsc_gene_6977.t1;Hsc_gene_6977.t2
|
— |
H2L0G5.1 Protein patched homolog 3 [Caenorhabditis elegans]
|
KAH7722157.1 protein patched protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0008150_0.952|GO:0005575_0.792|GO:0110165_0.789|GO:0071944_0.777|GO:0005886_0.768|GO:0016020_0.768|GO:0032501_0.713|GO:0009987_0.667|GO:0065007_0.578|GO:0050789_0.543|GO:0050794_0.512|GO:0003674_0.505|GO:0043226_0.502
|
IPR000731+615-776+|IPR003392+575-1032_1158-1358+
|
— |
PF02460+575-1032_1158-1358+Patched_family
|
G3DSA:1.20.1640.10:FF:000031+582-787+PaTChed_family
|
PTHR46022+44-1448+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
379-443;1378-1517
|
2.000
|
1-378;444-1377
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.749
|
168691.930
|
7.352
|
16.500
|
21.951
|
12.261
|
42.848
|
57.152
|
12.129
|
9.822
|
50.428
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
tan
|
2760.811
|
3923.193
|
2317.404
|
2048.759
|
3292.392
|
6980.572
|
2334.689
|
2415.663
|
3478.670
|
727.292
|
1906.454
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.989
|
-1.074
|
— |
0.652
|
1.099
|
-1.570
|
-1.640
|
— |
2.154
|
— |
2.845
|
— | — |
No JSON data available for plots.