Hg_chrom5_TN10mRNA_10014
Organism: Heterodera glycines Gene Locus: chr5:5460187-5461682 Feature type: polypeptideProtein Sequence
Length: 312
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.155 | 0.522 | 1.457 | 0.0 | 2.564 | 0.904 | 0.839 | 0.962 | 0.285 | 0.217 | 2.088 | 1.508 | 0.979 | 0.678 | 0.85 | 1.099 | 1.261 | 0.534 | 0.247 | 0.66 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9424
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKAETTEDEGVAKKAKL
|
— | — |
9-50
|
0.909
|
— | — |
0.000
|
— | — |
0.918
|
0.165
|
0.005
|
0.191
|
0.037
|
0.034
|
0.070
|
0.014
|
0.064
|
0.422
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009628
|
1.000
|
1.000
|
Hsc_gene_6966.t1
|
Hsc_gene_6966.t1
|
— | — |
KAF7633445.1 Cauli_VI domain-containing protein [Meloidogyne graminicola]
|
No
|
0.230
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR009027+15-58_76-120+|IPR011320+15-57_76-119+|IPR037056+13-61_75-123+
|
— |
PF01693+15-57_76-119+Caulimovirus_viroplasmin
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4;99-312
|
1.000
|
5-98
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.738
|
34814.800
|
4.787
|
-14.000
|
43.269
|
8.013
|
64.423
|
35.577
|
19.872
|
23.397
|
49.679
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
brown
|
1519.015
|
1563.381
|
1657.390
|
2443.184
|
3391.381
|
2130.717
|
1948.894
|
1592.698
|
1014.049
|
362.287
|
641.613
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.146
|
0.507
|
0.669
|
0.441
|
-0.656
|
— |
-0.525
|
0.435
|
— | — |
3.777
|
— | — |
No JSON data available for plots.