Hg_chrom5_TN10mRNA_10015
Organism: Heterodera glycines Gene Locus: chr5:5461962-5463213 Feature type: polypeptideProtein Sequence
Length: 216
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.969 | 0.969 | 0.505 | 0.16 | 2.083 | 1.662 | 0.606 | 0.694 | 1.646 | 1.001 | 1.473 | 4.085 | 0.257 | 0.356 | 1.323 | 0.728 | 0.911 | 1.052 | 0.356 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9425
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.435
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
lysosome_vacuole
|
— |
KRQK
|
62-101
|
0.983
|
— | — | — | — |
0.000
|
— | — |
0.126
|
0.444
|
0.014
|
0.219
|
0.072
|
0.473
|
0.119
|
0.032
|
0.363
|
0.084
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009629
|
1.000
|
1.000
|
Hsc_gene_6965.t1
|
Hsc_gene_6965.t1
|
— |
Q8CGS4.3 Charged multivesicular body protein 3 [Rattus norvegicus]
|
KAI1720179.1 snf7 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007034
|
GO:0005575_0.929|GO:0110165_0.918|GO:0005622_0.895|GO:0008150_0.888|GO:0009987_0.840|GO:0005737_0.809|GO:0043226_0.805|GO:0016020_0.801|GO:0043229_0.789|GO:0043227_0.733|GO:0051179_0.712|GO:0051234_0.704|GO:0006810_0.700|GO:0043231_0.698|GO:0071840_0.665|GO:0016192_0.654|GO:0071944_0.649|GO:0005886_0.647|GO:0016043_0.644|GO:0003674_0.642|GO:0051641_0.637|GO:0005488_0.627|GO:0061024_0.587|GO:0051649_0.581|GO:0046907_0.571|GO:0065007_0.554|GO:0005773_0.553|GO:0012505_0.550|GO:0007034_0.544|GO:0050789_0.535|GO:0050794_0.518
|
IPR005024+8-190_20-186+
|
— |
PF03357+20-186+Snf7
|
— |
PTHR10476+8-190+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-9;175-216
|
1.000
|
10-174
|
3frt_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.541
|
24431.400
|
8.959
|
3.500
|
32.870
|
2.778
|
54.167
|
45.833
|
17.593
|
15.278
|
40.278
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
yellow
|
1320.449
|
1191.338
|
976.393
|
1070.245
|
1274.268
|
1153.013
|
1247.913
|
1481.762
|
1137.441
|
1775.783
|
1502.208
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.517
|
-0.292
|
0.241
|
0.220
|
-0.129
|
— |
0.257
|
— | — | — | — | — | — |
No JSON data available for plots.