Hg_chrom5_TN10mRNA_10018
Organism: Heterodera glycines Gene Locus: chr5:5468768-5474748 Feature type: polypeptideProtein Sequence
Length: 1,163
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.74 | 1.12 | 0.844 | 0.889 | 0.774 | 0.86 | 0.696 | 1.419 | 0.86 | 1.406 | 0.73 | 1.214 | 1.576 | 1.191 | 1.404 | 1.585 | 0.846 | 0.912 | 0.463 | 0.632 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9428
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.673
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RRRK,RRRR
|
7-27
|
0.999
|
20-70
|
0.999
|
— | — |
0.002
|
— | — |
0.377
|
0.248
|
0.096
|
0.467
|
0.273
|
0.217
|
0.262
|
0.281
|
0.341
|
0.112
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009632
|
1.000
|
1.000
|
Hsc_gene_6962.t1
|
Hsc_gene_6962.t1
|
— |
P50747.1 Biotin--protein ligase [Homo sapiens]
|
KAH7703446.1 Protein BPL-1 c, partial [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004077|GO:0036211
|
GO:0008150_0.958|GO:0005575_0.911|GO:0110165_0.843|GO:0009987_0.797|GO:0016020_0.772|GO:0008152_0.766|GO:0005622_0.763|GO:0043226_0.723|GO:0043229_0.712|GO:0003674_0.697|GO:0043227_0.686|GO:0043231_0.674|GO:0005737_0.660|GO:0044237_0.636|GO:0043170_0.515
|
IPR004143+892-1086_930-1043+|IPR004408+913-1142+|IPR045864+894-1101_906-1101+
|
— |
PF03099+930-1043+Biotin/lipoate_A/B_protein_ligase_family
|
— |
PTHR12835+609-1161+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
324-373
|
2.000
|
1-323;374-1163
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.932
|
129284.590
|
9.085
|
44.500
|
23.818
|
11.264
|
48.237
|
51.763
|
14.531
|
9.286
|
52.709
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
saddlebrown
|
1896.970
|
1573.070
|
2692.668
|
2352.121
|
2029.543
|
2233.271
|
2842.559
|
4251.082
|
1003.392
|
806.332
|
890.787
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.546
|
0.443
|
— |
-0.245
|
0.152
|
0.358
|
0.829
|
-0.441
|
— | — | — | — | — |
No JSON data available for plots.