Hg_chrom5_TN10mRNA_10019
Organism: Heterodera glycines Gene Locus: chr5:5474916-5477032 Feature type: polypeptideProtein Sequence
Length: 462
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.428 | 1.812 | 1.338 | 0.224 | 0.83 | 0.999 | 0.335 | 1.84 | 1.684 | 1.521 | 0.722 | 0.891 | 2.165 | 1.082 | 0.928 | 1.113 | 0.852 | 0.853 | 0.5 | 0.828 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9429
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.971
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.206
|
0.353
|
0.018
|
0.550
|
0.284
|
0.747
|
0.288
|
0.027
|
0.269
|
0.020
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009633
|
1.000
|
1.000
|
Hsc_gene_6961.t1
|
Hsc_gene_6961.t1
|
— |
Q07960.1 Rho GTPase-activating protein 1 [Homo sapiens]
|
KAI1720331.1 rhoGAP domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007165
|
GO:0005575_0.854|GO:0110165_0.845|GO:0008150_0.819|GO:0005622_0.726|GO:0009987_0.716|GO:0003674_0.648|GO:0005737_0.646|GO:0065007_0.605|GO:0050789_0.596|GO:0050794_0.587|GO:0016020_0.582|GO:0005488_0.557|GO:0005515_0.527|GO:0050896_0.511
|
IPR000198+263-457_275-454_278-430+|IPR001251+79-235_82-226_85-232_99-232+|IPR008936+245-458_256-457+|IPR036865+90-234_95-217+
|
SM00324+275-454+|SM00516+85-232+
|
PF00620+278-430+RhoGAP_domain|PF13716+99-232+Divergent_CRAL/TRIO_domain
|
— |
PTHR45808+62-457+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-18
|
1.000
|
19-462
|
1tx4_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.551
|
53410.690
|
5.932
|
-5.500
|
25.325
|
14.935
|
50.000
|
50.000
|
12.987
|
12.338
|
46.537
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
1161.977
|
501.376
|
849.318
|
793.310
|
936.216
|
1158.253
|
1131.659
|
1133.197
|
1051.380
|
1856.364
|
1511.371
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.531
|
0.525
|
— |
0.207
|
0.322
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.