Hg_chrom5_TN10mRNA_10020
Organism: Heterodera glycines Gene Locus: chr5:5477104-5477846 Feature type: polypeptideProtein Sequence
Length: 183
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.318 | 0.762 | 1.888 | 0.565 | 1.457 | 1.261 | 0.455 | 1.093 | 0.971 | 1.255 | 1.573 | 1.607 | 1.518 | 0.841 | 0.669 | 1.171 | 0.806 | 0.828 | 1.261 | 0.643 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9430
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— | — | — | — | — | — |
1-20
|
0.739
|
0.977
|
0.000
|
0.000
|
0.189
|
0.280
|
0.065
|
0.236
|
0.850
|
0.082
|
0.168
|
0.057
|
0.245
|
0.208
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
Q8T9B6.2 LDLR chaperone boca [Drosophila melanogaster]
|
KAH7696381.1 LDLR chaperone boca-like protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006457
|
GO:0008150_0.936|GO:0005575_0.933|GO:0110165_0.933|GO:0009987_0.886|GO:0016020_0.861|GO:0008152_0.763|GO:0043170_0.761|GO:0044238_0.753|GO:0009058_0.750|GO:0009059_0.750|GO:0044237_0.750|GO:0044249_0.750|GO:0010467_0.747|GO:0019538_0.739|GO:0071944_0.733|GO:0005622_0.717|GO:0005886_0.705|GO:0051604_0.683|GO:0006457_0.679|GO:0043226_0.662|GO:0005737_0.652|GO:0043229_0.652|GO:0043227_0.624|GO:0043231_0.608|GO:0003674_0.606|GO:0005488_0.599|GO:0005515_0.584|GO:0051179_0.540|GO:0051234_0.529|GO:0006810_0.524|GO:0051641_0.524
|
IPR019330+20-179_24-179+
|
— |
PF10185+24-179+Chaperone_for_wingless_signalling_and_trafficking_of_LDL_receptor
|
— |
PTHR17600+20-179+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-76;176-183
|
1.000
|
77-175
|
2i9s_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.764
|
21245.950
|
4.684
|
-8.000
|
34.973
|
11.475
|
56.284
|
43.716
|
15.847
|
19.126
|
44.809
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
857.873
|
309.484
|
833.885
|
715.013
|
747.838
|
741.800
|
578.617
|
844.505
|
611.090
|
1505.697
|
1122.294
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.202
|
1.071
|
— | — | — |
-0.349
|
— |
-0.405
|
— | — | — | — | — |