Hg_chrom5_TN10mRNA_10023
Organism: Heterodera glycines Gene Locus: chr5:5482484-5484741 Feature type: polypeptideProtein Sequence
Length: 472
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.764 | 1.675 | 0.809 | 0.804 | 1.024 | 1.086 | 0.58 | 1.589 | 0.847 | 2.061 | 0.578 | 0.623 | 1.177 | 1.059 | 1.254 | 1.362 | 0.729 | 0.706 | 0.163 | 0.685 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9432
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.909
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.593
|
0.290
|
0.010
|
0.632
|
0.214
|
0.298
|
0.194
|
0.043
|
0.213
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001317
|
2.000
|
3.000
|
Hsc_gene_19630.t1;Hsc_gene_6959.t1;Hsc_gene_6959.t2
|
Hsc_gene_6959.t2
|
— |
Q32NT4.1 Leucine-rich repeat-containing protein 58 [Xenopus laevis]
|
KAI1720327.1 leucine rich repeat domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
— |
IPR001611+151-208_174-196_220-277+|IPR003591+149-171_172-194_195-218_219-239_241-263_264-286_287-310+|IPR025875+289-327+|IPR032675+86-361+|IPR050715+94-419+
|
SM00365+172-190_218-239_241-257_264-292_310-343+|SM00369+149-171_172-194_195-218_219-239_241-263_264-286_287-310+
|
PF12799+289-327+Leucine_Rich_repeats_(2_copies)|PF13855+151-208_220-277+Leucine_rich_repeat
|
— |
PTHR45752+94-419+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-53
|
1.000
|
54-472
|
4u06_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.803
|
52677.890
|
7.009
|
4.500
|
23.729
|
9.958
|
49.153
|
50.847
|
13.136
|
10.593
|
49.576
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
midnightblue
|
1199.565
|
777.035
|
888.891
|
859.841
|
762.777
|
1482.361
|
1820.983
|
1860.177
|
674.732
|
1572.522
|
1187.755
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
-0.205
|
0.973
|
0.307
|
— | — | — | — | — | — | — |
No JSON data available for plots.