Hg_chrom5_TN10mRNA_10024
Organism: Heterodera glycines Gene Locus: chr5:5484916-5487624 Feature type: polypeptideProtein Sequence
Length: 436
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.587 | 1.44 | 0.792 | 0.554 | 0.917 | 1.059 | 0.655 | 1.491 | 1.223 | 1.24 | 0.695 | 1.754 | 2.102 | 0.75 | 1.17 | 1.409 | 0.602 | 1.182 | 0.706 | 0.877 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9433
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.762
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.188
|
0.702
|
0.110
|
0.203
|
0.389
|
0.117
|
0.109
|
0.198
|
0.136
|
0.040
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009635
|
1.000
|
1.000
|
Hsc_gene_6958.t1
|
Hsc_gene_6958.t1
|
— |
Q5U458.2 DnaJ homolog subfamily C member 11 [Mus musculus]
|
KAF7633435.1 J domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.869|GO:0110165_0.862|GO:0005622_0.800|GO:0008150_0.775|GO:0005737_0.755|GO:0016020_0.748|GO:0043226_0.689|GO:0043229_0.684|GO:0043227_0.652|GO:0043231_0.632|GO:0009987_0.606
|
IPR001623+32-95_33-92_33-100_33-103_35-53_53-68_75-95+|IPR036869+25-105_29-104+|IPR052243+22-428+
|
SM00271+32-95+
|
PF00226+33-100+DnaJ_domain
|
— |
PTHR44157+22-428+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-22
|
1.000
|
23-436
|
5vso_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.814
|
49650.790
|
7.962
|
8.500
|
23.165
|
14.450
|
47.018
|
52.982
|
13.303
|
9.862
|
47.936
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey60
|
755.921
|
501.788
|
515.689
|
641.249
|
784.101
|
658.620
|
915.847
|
524.023
|
1345.777
|
594.827
|
916.663
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.190
|
0.216
|
0.423
|
0.259
|
-0.237
|
0.485
|
-0.433
|
0.947
|
— | — | — | — | — |
No JSON data available for plots.