SCN Proteipedia

Hg_chrom5_TN10mRNA_10025

Organism: Heterodera glycines Gene Locus: chr5:5489038-5492926 Feature type: polypeptide

Protein Sequence

Length: 623

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.877	0.747	1.109	0.277	1.204	1.029	0.936	1.685	1.07	1.301	0.948	0.944	1.115	0.864	1.507	0.848	1.079	1.143	0.494	0.283	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9434	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Eggs_Female	0.977

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	mitochondrial_transit_peptide	mitochondrion	—	GEKVMKPPPTPPKGQKHKGRTLAIGKKAKDEGGRA	12-32	0.997	3-37	0.997	—	—	0.000	—	—	0.148	0.894	0.042	0.112	0.413	0.094	0.113	0.178	0.078	0.022

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009636	1.000	1.000	Hsc_gene_6957.t1	Hsc_gene_6957.t1	—	P54813.2 ATP-dependent zinc metalloprotease YME1 homolog [Caenorhabditis elegans]	KAH7731277.1 ATP-dependent zinc metalloprotease YME1 isoform X1 [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004176\|GO:0004222\|GO:0005524\|GO:0006508\|GO:0016020\|GO:0016887	GO:0005575_0.905\|GO:0110165_0.905\|GO:0016020_0.825\|GO:0008150_0.802\|GO:0005622_0.776\|GO:0043226_0.710\|GO:0005737_0.697\|GO:0043229_0.690\|GO:0043227_0.636\|GO:0009987_0.618\|GO:0043231_0.616\|GO:0008152_0.596\|GO:0044238_0.581\|GO:0043170_0.564\|GO:0019538_0.547\|GO:0003674_0.535	IPR000642+401-586+\|IPR003593+184-321+\|IPR003959+188-318+\|IPR003960+289-307+\|IPR005936+2-622_106-583+\|IPR027417+134-318_142-388+\|IPR037219+393-594_402-595+\|IPR041569+340-384+	SM00382+184-321+	PF00004+188-318+ATPase_family_associated_with_various_cellular_activities_(AAA)\|PF01434+401-586+Peptidase_family_M41\|PF17862+340-384+AAA+_lid_domain	G3DSA:1.10.8.60:FF:000001+320-393+ATP-dependent_zinc_metalloprotease_FtsH\|G3DSA:1.20.58.760:FF:000002+393-594+ATP-dependent_zinc_metalloprotease_FtsH\|G3DSA:3.40.50.300:FF:000195+135-319+ATP-dependent_zinc_metalloprotease_FTSH_11	PTHR23076+101-592+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	427-470;518-623	2.000	1-426;471-517	5ubv_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.693	69047.540	8.138	12.500	30.337	8.989	50.080	49.920	17.014	13.323	50.080

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	tan	3447.275	5732.462	3118.629	3482.598	4442.886	5320.336	5443.272	3523.978	2503.416	1555.205	1961.582

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.108	-0.856	0.268	0.319	0.275	—	-0.701	0.771	—	—	—	—	—

No JSON data available for plots.

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