SCN Proteipedia

Hg_chrom5_TN10mRNA_10027

Organism: Heterodera glycines Gene Locus: chr5:5495895-5502671 Feature type: polypeptide

Protein Sequence

Length: 1,032

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.228	1.037	0.951	0.501	0.969	2.037	0.842	1.841	0.452	1.362	0.25	0.912	0.996	1.658	1.266	1.218	0.667	0.661	0.969	0.541	0.0

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Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9436	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.801	0.089	0.007	0.342	0.043	0.108	0.060	0.008	0.074	0.056

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004116	1.000	2.000	Hsc_gene_6954.t1;Hsc_gene_6954.t2	Hsc_gene_6954.t1;Hsc_gene_6954.t2;Hsc_gene_6955.t1	—	B2GV50.1 DNA-binding protein RFX2 [Rattus norvegicus]	KAI1720313.1 RFX DNA-binding domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677\|GO:0003700\|GO:0006355	GO:0008150_0.871\|GO:0005575_0.774\|GO:0110165_0.771\|GO:0003674_0.692\|GO:0005622_0.685\|GO:0009987_0.681\|GO:0065007_0.677\|GO:0050789_0.670\|GO:0005488_0.666\|GO:0016020_0.662\|GO:0050794_0.651\|GO:0043226_0.626\|GO:0043229_0.573\|GO:0043227_0.558\|GO:0097159_0.542\|GO:0008152_0.541\|GO:0043170_0.541\|GO:0044238_0.532\|GO:0019222_0.530\|GO:0031323_0.525\|GO:0044237_0.525\|GO:0032502_0.524\|GO:0048856_0.524\|GO:0003676_0.522\|GO:0009058_0.519\|GO:0060255_0.517\|GO:0080090_0.515\|GO:0009059_0.507\|GO:0010467_0.507\|GO:0044249_0.507	IPR003150+329-404_330-405+\|IPR036388+330-404+\|IPR036390+331-404+\|IPR039779+266-932+	—	PF02257+329-404+RFX_DNA-binding_domain	G3DSA:1.10.10.10:FF:000422+330-404+DNA-binding_protein_RFX7	PTHR12619+266-932+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	57-343;396-514;908-1032	3.000	1-56;344-395;515-907	1dp7_P	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.707	112805.310	5.829	-14.000	22.578	10.368	47.578	52.422	11.531	11.047	54.360

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	brown	1082.910	6852.852	2214.177	1292.570	349.889	171.181	339.394	820.018	131.095	124.378	127.257

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.859	-2.544	-0.668	-1.917	-1.017	0.997	2.161	-1.133	—	—	—	—	—

No JSON data available for plots.

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