Hg_chrom5_TN10mRNA_10032
Organism: Heterodera glycines Gene Locus: chr5:5522385-5524610 Feature type: polypeptideProtein Sequence
Length: 386
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.904 | 0.542 | 0.942 | 1.787 | 1.339 | 0.864 | 1.079 | 0.907 | 0.921 | 1.295 | 0.942 | 1.067 | 1.079 | 0.697 | 1.745 | 0.777 | 0.849 | 0.864 | 1.794 | 0.229 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9441
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_6947
|
— |
29-Not_Clustered
|
0.907
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
RRIGHQWQDGDFLFYCKRK
|
— | — | — | — |
1-24
|
0.997
|
1.000
|
0.000
|
0.000
|
0.324
|
0.416
|
0.064
|
0.247
|
0.158
|
0.108
|
0.158
|
0.121
|
0.420
|
0.817
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009640
|
1.000
|
1.000
|
Hsc_gene_6947.t1
|
Hsc_gene_6947.t1
|
— | — |
CAD2179190.1 unnamed protein product [Meloidogyne enterolobii]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR040282+24-190+
|
— |
PF23003+56-105_119-190_198-267+Fibronectin_type_I_domain
|
— |
PTHR35572+24-190+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
378-386
|
1.000
|
1-377
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.734
|
43077.500
|
8.061
|
9.500
|
29.793
|
8.808
|
46.114
|
53.886
|
16.580
|
13.212
|
49.482
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
red
|
3350.387
|
32.311
|
131.131
|
158.563
|
6879.261
|
27926.578
|
1345.651
|
1188.632
|
27.753
|
513.832
|
305.513
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.792
|
2.159
|
0.382
|
5.408
|
2.036
|
-4.364
|
-4.663
|
— |
-4.246
|
— |
3.928
|
— | — |