Hg_chrom5_TN10mRNA_10034
Organism: Heterodera glycines Gene Locus: chr5:5531364-5534061 Feature type: polypeptideProtein Sequence
Length: 466
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.848 | 1.198 | 1.171 | 0.296 | 1.18 | 1.431 | 0.869 | 0.858 | 1.24 | 1.247 | 0.585 | 1.641 | 1.609 | 1.238 | 0.657 | 1.165 | 0.95 | 0.813 | 0.495 | 0.505 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9443
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.251
|
0.119
|
0.009
|
0.820
|
0.105
|
0.114
|
0.219
|
0.082
|
0.162
|
0.026
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004118
|
1.000
|
2.000
|
Hsc_gene_6945.t1;Hsc_gene_6945.t2
|
Hsc_gene_6945.t1;Hsc_gene_6945.t2
|
— | — |
KAI1727861.1 polyadenylate-binding protein-interacting protein 1 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0005515
|
GO:0008150_0.956|GO:0005575_0.925|GO:0110165_0.923|GO:0009987_0.905|GO:0005622_0.850|GO:0065007_0.846|GO:0003674_0.845|GO:0050789_0.834|GO:0050794_0.812|GO:0005488_0.798|GO:0005737_0.793|GO:0008152_0.771|GO:0044238_0.750|GO:0044237_0.746|GO:0009058_0.744|GO:0048518_0.744|GO:0043170_0.735|GO:0048522_0.732|GO:0048519_0.731|GO:0019222_0.729|GO:0031323_0.724|GO:0044249_0.723|GO:0019538_0.720|GO:0048523_0.720|GO:0009059_0.718|GO:0065008_0.716|GO:0010467_0.715|GO:0060255_0.715|GO:0080090_0.715|GO:0006139_0.714|GO:0009056_0.706|GO:0009889_0.705|GO:0009893_0.705|GO:0031326_0.705|GO:0010468_0.702|GO:0010556_0.702|GO:0010604_0.702|GO:0031325_0.701|GO:0090304_0.700|GO:0016070_0.699|GO:0009891_0.696|GO:0031328_0.693|GO:0009057_0.692|GO:0044419_0.692|GO:0009892_0.691|GO:0019219_0.691|GO:0010557_0.690|GO:0051246_0.690|GO:0010605_0.688|GO:0051252_0.687|GO:0009894_0.686|GO:0031324_0.686|GO:0045935_0.684|GO:0097159_0.684|GO:0009890_0.683|GO:0010558_0.683|GO:0031327_0.683|GO:0051254_0.683|GO:0010628_0.682|GO:0010629_0.679|GO:0045934_0.678|GO:0051253_0.678|GO:0010608_0.677|GO:0016071_0.677|GO:0034655_0.677|GO:0009896_0.676|GO:0044403_0.676|GO:0051247_0.676|GO:0006412_0.675|GO:0006414_0.675|GO:0141188_0.675|GO:0006401_0.674|GO:0006402_0.674|GO:0016032_0.674|GO:0061013_0.674|GO:1903311_0.674|GO:0006417_0.673|GO:0000288_0.670|GO:0000956_0.670|GO:0002181_0.670|GO:0003676_0.670|GO:0006413_0.670|GO:0009895_0.670|GO:0019080_0.670|GO:0019081_0.670|GO:0043487_0.670|GO:0043488_0.670|GO:0043489_0.670|GO:0044788_0.670|GO:0044794_0.670|GO:0045727_0.670|GO:0048255_0.670|GO:0050779_0.670|GO:0051702_0.670|GO:0051851_0.670|GO:0061014_0.670|GO:0061157_0.670|GO:0070934_0.670|GO:1900151_0.670|GO:1900152_0.670|GO:1902369_0.670|GO:1902373_0.670|GO:1903312_0.670|GO:1903313_0.670|GO:2000765_0.670|GO:2000767_0.670|GO:0003723_0.661|GO:0008494_0.650|GO:0045182_0.650|GO:0090079_0.650|GO:0032991_0.638|GO:0005829_0.612|GO:0106002_0.540
|
IPR003890+228-357+|IPR016024+194-358+|IPR051367+246-362+
|
— |
PF02854+228-357+MIF4G_domain
|
— |
PTHR23254+246-362+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-122;450-466
|
1.000
|
123-449
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.580
|
51099.390
|
4.282
|
-26.000
|
22.318
|
9.871
|
46.996
|
53.004
|
8.798
|
13.519
|
52.790
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
6399.384
|
6549.030
|
7780.586
|
5538.238
|
4548.265
|
4868.129
|
5234.380
|
10297.572
|
7618.024
|
5477.713
|
6394.989
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.379
|
-0.382
|
-0.316
|
— | — |
0.976
|
-0.833
|
— | — | — | — | — |
No JSON data available for plots.