Hg_chrom5_TN10mRNA_10035
Organism: Heterodera glycines Gene Locus: chr5:5538716-5542212 Feature type: polypeptideProtein Sequence
Length: 412
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.818 | 1.016 | 1.192 | 1.172 | 0.971 | 0.809 | 0.405 | 0.85 | 0.863 | 2.263 | 0.405 | 1.142 | 1.079 | 0.467 | 1.734 | 1.595 | 0.756 | 0.883 | 0.747 | 0.571 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9444
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — |
66-101
|
0.995
|
37-76
|
1.000
|
— | — |
0.000
|
— | — |
0.554
|
0.100
|
0.011
|
0.634
|
0.163
|
0.110
|
0.130
|
0.014
|
0.168
|
0.027
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009642
|
1.000
|
1.000
|
Hsc_gene_6944.t1
|
Hsc_gene_6944.t1;Hsc_gene_6944.t2
|
— | — |
KAF7635176.1 F-box domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.816|GO:0005575_0.799|GO:0110165_0.798|GO:0005622_0.734|GO:0005737_0.649|GO:0009987_0.637|GO:0008152_0.576|GO:0044238_0.565|GO:0043170_0.564|GO:0016020_0.563|GO:0003674_0.550|GO:0065007_0.544|GO:0050789_0.538|GO:0019538_0.530|GO:0050794_0.521|GO:0043226_0.513|GO:0043229_0.502
|
IPR001611+306-318+|IPR001810+82-128_87-128_88-128+|IPR006553+200-225_251-275_306-331_332-357+|IPR032675+81-411+|IPR036047+80-130+
|
SM00256+88-128+|SM00367+200-225_251-275_306-331_332-357+
|
PF12937+87-128+F-box-like|PF13516+306-318+Leucine_Rich_repeat
|
— |
PTHR16134+84-368+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-412
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.583
|
46434.290
|
6.172
|
-1.500
|
25.243
|
8.495
|
48.544
|
51.456
|
12.864
|
12.379
|
48.786
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
696.235
|
94.487
|
116.325
|
318.592
|
668.049
|
387.988
|
1399.904
|
121.210
|
46.486
|
1846.207
|
1074.898
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.617
|
1.563
|
1.037
|
-0.769
|
1.862
|
-1.790
|
3.675
|
-5.441
|
— | — | — | — |
No JSON data available for plots.