Hg_chrom5_TN10mRNA_10036
Organism: Heterodera glycines Gene Locus: chr5:5542410-5550659 Feature type: polypeptideProtein Sequence
Length: 1,351
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.128 | 0.912 | 0.592 | 0.383 | 2.591 | 1.689 | 0.247 | 1.332 | 0.79 | 1.4 | 0.998 | 1.437 | 0.493 | 0.427 | 2.462 | 0.888 | 0.886 | 0.437 | 0.854 | 0.152 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9445
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.854
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RKLQQWEETARREKA,RRRIEAGLREQRKQKA,RKWPKIKTELAKLRQK,RRQTEDLMDDRERRYKA,KRVEDEMTTLAEAQRKARA
|
— | — |
9-33
|
0.995
|
— | — |
0.000
|
— | — |
0.265
|
0.202
|
0.073
|
0.552
|
0.247
|
0.116
|
0.243
|
0.201
|
0.232
|
0.219
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004119
|
1.000
|
2.000
|
Hsc_gene_6943.t1;Hsc_gene_6943.t2
|
Hsc_gene_6943.t1;Hsc_gene_6943.t2
|
— | — |
KAI1718488.1 rootletin [Ditylenchus destructor]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
201-279;416-1351
|
2.000
|
1-200;280-415
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.601
|
158452.200
|
7.448
|
16.000
|
40.118
|
6.070
|
62.250
|
37.750
|
21.318
|
18.801
|
36.788
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkgrey
|
1465.198
|
3167.201
|
1871.770
|
846.623
|
562.975
|
693.412
|
1016.411
|
861.526
|
647.334
|
2542.270
|
1730.155
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.989
|
-2.041
|
-1.035
|
-0.621
|
0.316
|
0.561
|
0.209
|
0.381
|
— | — | — | — | — |
No JSON data available for plots.