Hg_chrom5_TN10mRNA_10040
Organism: Heterodera glycines Gene Locus: chr5:5564311-5565888 Feature type: polypeptideProtein Sequence
Length: 315
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.886 | 0.96 | 1.039 | 0.219 | 0.476 | 0.488 | 0.605 | 0.952 | 0.635 | 1.673 | 0.192 | 0.56 | 3.175 | 1.465 | 0.907 | 1.723 | 0.885 | 1.203 | 1.465 | 0.56 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9449
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.820
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum|lysosome_vacuole|golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.184
|
0.190
|
0.032
|
0.147
|
0.748
|
0.699
|
0.701
|
0.237
|
0.275
|
0.041
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009646
|
1.000
|
1.000
|
Hsc_gene_6939.t1
|
Hsc_gene_16841.t1;Hsc_gene_6939.t1;Hsc_gene_6939.t2
|
— |
Q91VU1.1 Protein YIPF1 [Mus musculus]
|
KAI1718482.1 yip1 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005794|GO:0016020|GO:0016192|GO:0031267
|
GO:0005575_0.916|GO:0110165_0.915|GO:0071944_0.890|GO:0016020_0.884|GO:0005886_0.882|GO:0005622_0.760|GO:0005737_0.760|GO:0005773_0.744|GO:0043226_0.744|GO:0043227_0.744|GO:0043229_0.744|GO:0043231_0.744|GO:0012505_0.707|GO:0031982_0.609|GO:0031984_0.594|GO:0031410_0.589|GO:0097708_0.589|GO:0005794_0.583|GO:0098791_0.556|GO:0005802_0.555|GO:0030133_0.547|GO:0000138_0.540|GO:0005795_0.540|GO:0005797_0.540|GO:0031985_0.540
|
IPR006977+91-255+|IPR039765+46-267+
|
— |
PF04893+91-255+Yip1_domain
|
— |
PTHR12822+46-267+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4
|
1.000
|
5-315
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.733
|
34907.750
|
4.864
|
-6.000
|
16.190
|
17.143
|
39.683
|
60.317
|
7.619
|
8.571
|
56.190
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
saddlebrown
|
1682.025
|
1436.615
|
1189.488
|
1318.930
|
1631.224
|
1885.508
|
2236.452
|
1877.586
|
1603.622
|
1815.215
|
1724.532
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.501
|
-0.260
|
0.257
|
0.274
|
0.224
|
0.256
|
— |
0.394
|
— | — | — | — | — |
No JSON data available for plots.