Hg_chrom5_TN10mRNA_10042
Organism: Heterodera glycines Gene Locus: chr5:5570803-5572374 Feature type: polypeptideProtein Sequence
Length: 313
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.669 | 0.52 | 1.452 | 0.11 | 1.917 | 1.311 | 0.494 | 0.958 | 1.562 | 0.863 | 1.452 | 0.94 | 1.597 | 0.676 | 1.76 | 0.685 | 0.943 | 0.678 | 1.229 | 0.564 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9451
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.952
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.914
|
0.060
|
0.009
|
0.281
|
0.049
|
0.014
|
0.070
|
0.006
|
0.065
|
0.026
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009648
|
1.000
|
1.000
|
Hsc_gene_6937.t1
|
Hsc_gene_6937.t1
|
— |
A8WXX7.1 Protein FAM50 homolog [Caenorhabditis briggsae]
|
KAI6194055.1 Protein FAM50-like protein [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005634
|
GO:0005575_0.803|GO:0110165_0.796|GO:0005622_0.774|GO:0008150_0.762|GO:0043226_0.726|GO:0016020_0.720|GO:0043229_0.712|GO:0009987_0.709|GO:0043227_0.675|GO:0043231_0.643|GO:0065007_0.559|GO:0050789_0.551|GO:0008152_0.549|GO:0005634_0.540|GO:0044238_0.536|GO:0050794_0.533|GO:0044237_0.531|GO:0009058_0.526|GO:0043170_0.524|GO:0044249_0.513|GO:0009059_0.501
|
IPR007005+3-306+|IPR048337+167-306+
|
— |
PF04921+167-306+XAP5,_circadian_clock_regulator_C-terminal_domain
|
— |
PTHR12722+3-306+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-50;111-159
|
2.000
|
51-110;160-313
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.669
|
36951.730
|
6.285
|
-1.000
|
39.617
|
11.182
|
57.508
|
42.492
|
20.128
|
19.489
|
38.978
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
yellow
|
1579.811
|
800.799
|
1103.002
|
1297.675
|
1384.355
|
1398.184
|
1528.311
|
1622.363
|
2796.931
|
1388.466
|
1992.094
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.232
|
0.559
|
0.343
|
— | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.