Hg_chrom5_TN10mRNA_10044
Organism: Heterodera glycines Gene Locus: chr5:5573988-5575684 Feature type: polypeptideProtein Sequence
Length: 390
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.775 | 1.073 | 1.492 | 1.149 | 0.812 | 0.723 | 0.733 | 0.769 | 1.311 | 1.525 | 0.971 | 1.659 | 1.211 | 0.789 | 0.994 | 1.062 | 0.631 | 1.282 | 0.789 | 0.377 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9453
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.592
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — |
9-50
|
0.927
|
3-35
|
0.957
|
— | — |
0.000
|
— | — |
0.589
|
0.195
|
0.089
|
0.618
|
0.168
|
0.084
|
0.069
|
0.019
|
0.151
|
0.128
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004120
|
1.000
|
2.000
|
Hsc_gene_6935.t1;Hsc_gene_6935.t2
|
— | — | — |
KAF7640348.1 NTP_transferase domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0009058
|
GO:0005575_0.881|GO:0110165_0.870|GO:0005622_0.803|GO:0005737_0.788|GO:0008150_0.723|GO:0009987_0.657|GO:0003674_0.654|GO:0008152_0.568|GO:0005488_0.566|GO:0044238_0.550|GO:0044237_0.541|GO:0005515_0.535|GO:0043170_0.531|GO:0009058_0.530|GO:0044249_0.515|GO:0019538_0.513|GO:0009059_0.503
|
IPR005835+9-148+|IPR029044+3-284_8-347+|IPR051960+298-379+
|
— |
PF00483+9-148+Nucleotidyl_transferase
|
— |
PTHR45989+298-379+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-390
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.576
|
43124.830
|
5.490
|
-4.000
|
25.897
|
8.205
|
44.615
|
55.385
|
12.821
|
13.077
|
52.821
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
810.269
|
1216.890
|
964.704
|
738.060
|
811.713
|
802.572
|
960.197
|
1018.757
|
608.418
|
646.276
|
630.051
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.565
|
-0.859
|
-0.277
|
— | — |
0.269
|
0.239
|
— | — | — | — | — | — |
No JSON data available for plots.