Hg_chrom5_TN10mRNA_10046
Organism: Heterodera glycines Gene Locus: chr5:5579854-5580337 Feature type: polypeptideProtein Sequence
Length: 96
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.242 | 1.696 | 0.947 | 2.155 | 0.521 | 0.267 | 0.868 | 2.604 | 0.463 | 1.126 | 1.42 | 1.225 | 1.447 | 1.803 | 1.276 | 0.744 | 0.683 | 0.631 | 1.603 | 1.225 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9455
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.447
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.379
|
0.295
|
0.005
|
0.651
|
0.069
|
0.188
|
0.099
|
0.034
|
0.230
|
0.091
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009651
|
1.000
|
1.000
|
Hsc_gene_6933.t1
|
Hsc_gene_6933.t1
|
ZK622.4
|
G5EF51.1 Lim and transglutaminase domain protein ltd-1 [Caenorhabditis elegans]
|
KAI6172571.1 Kyphoscoliosis peptidase [Aphelenchoides besseyi];KAI6194843.1 Kyphoscoliosis peptidase [Aphelenchoides besseyi];KAI6197416.1 Kyphoscoliosis peptidase [Aphelenchoides besseyi];KAI6219717.1 Kyphoscoliosis peptidase [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.815|GO:0110165_0.805|GO:0005622_0.709|GO:0008150_0.668|GO:0043226_0.614|GO:0043229_0.594|GO:0005737_0.582|GO:0009987_0.558|GO:0003674_0.536
|
IPR001781+3-70_4-63_5-41_5-61+
|
SM00132+4-63+
|
PF00412+5-61+LIM_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
96-96
|
1.000
|
1-95
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.823
|
11109.800
|
9.305
|
9.500
|
29.167
|
16.667
|
46.875
|
53.125
|
20.833
|
8.333
|
51.042
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
1113.005
|
77.813
|
340.653
|
484.026
|
248.340
|
93.814
|
50.751
|
388.424
|
1526.813
|
3092.855
|
2421.694
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.900
|
2.498
|
0.616
|
-0.993
|
-1.391
|
-0.872
|
1.945
|
-2.790
|
— | — |
-3.491
|
— | — |
No JSON data available for plots.