SCN Proteipedia

Hg_chrom5_TN10mRNA_10047

Organism: Heterodera glycines Gene Locus: chr5:5584750-5595059 Feature type: polypeptide

Protein Sequence

Length: 1,699

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.835	0.999	0.867	0.731	1.01	1.373	0.757	1.825	1.02	1.233	0.508	0.727	1.177	1.347	1.61	1.236	0.859	0.91	0.996	0.467	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9456	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Egg_Male	0.992

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	—	1-21	0.989	88-108	0.933	—	—	0.000	—	—	0.130	0.073	0.019	0.287	0.138	0.348	0.250	0.056	0.835	0.150

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009652	1.000	1.000	Hsc_gene_6932.t1	Hsc_gene_6932.t1	—	G5EGJ9.1 Receptor-type tyrosine-protein phosphatase dep-1 [Caenorhabditis elegans]	KAI1720266.1 protein-tyrosine phosphatase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004725\|GO:0005515\|GO:0006470\|GO:0016311	GO:0008150_0.930\|GO:0009987_0.881\|GO:0003674_0.811\|GO:0005575_0.750\|GO:0110165_0.750\|GO:0065007_0.690\|GO:0050789_0.684\|GO:0032502_0.661\|GO:0032501_0.649\|GO:0048856_0.643\|GO:0016020_0.633\|GO:0003824_0.595\|GO:0050794_0.586\|GO:0007275_0.557\|GO:0071944_0.552\|GO:0005886_0.538\|GO:0016787_0.516\|GO:0008152_0.508\|GO:0140096_0.504\|GO:0044238_0.503	IPR000242+1293-1559_1294-1557_1318-1554_1347-1354_1363-1383_1452-1469_1493-1511_1524-1539_1540-1550+\|IPR000387+1472-1548+\|IPR003595+1453-1556+\|IPR003961+238-322_333-414_333-418_335-429_525-621_769-838_769-848+\|IPR013783+328-425_758-850+\|IPR016130+1496-1506+\|IPR029021+1268-1562_1272-1558+\|IPR036116+332-853+\|IPR050713+198-1569+	SM00060+238-322_333-414_525-621_769-838+\|SM00194+1293-1559+\|SM00404+1453-1556+	PF00102+1318-1554+Protein-tyrosine_phosphatase	G3DSA:3.90.190.10:FF:000009+1271-1561+Receptor-type_tyrosine-protein_phosphatase_beta	PTHR46957+198-1569+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-15;826-873;1082-1267;1623-1699	3.000	16-825;874-1081;1268-1622	3s3k_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.832	189600.180	7.961	38.000	25.721	10.771	49.264	50.736	14.891	10.830	51.619

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	violet	2308.003	4165.003	2583.882	2489.628	2464.733	3038.283	2565.693	5271.163	890.209	962.963	931.783

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.918	-0.880	—	—	0.318	-0.235	0.691	-0.897	—	—	—	—	—

No JSON data available for plots.

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