Hg_chrom5_TN10mRNA_10048
Organism: Heterodera glycines Gene Locus: chr5:5595440-5596156 Feature type: polypeptideProtein Sequence
Length: 207
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.562 | 1.123 | 1.142 | 0.5 | 0.886 | 0.743 | 1.15 | 1.208 | 1.288 | 1.11 | 0.952 | 1.705 | 0.805 | 1.208 | 1.479 | 1.38 | 0.792 | 0.878 | 1.115 | 0.284 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9457
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.901
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
SKGRKRGVDRSKLEPTGKGKKG
|
— | — |
3-43
|
1.000
|
— | — |
0.000
|
— | — |
0.838
|
0.140
|
0.025
|
0.575
|
0.057
|
0.019
|
0.021
|
0.057
|
0.045
|
0.073
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009653
|
1.000
|
1.000
|
Hsc_gene_6931.t1
|
Hsc_gene_6931.t1
|
— |
P34452.2 Uncharacterized protein F54F2.7 [Caenorhabditis elegans]
|
KAI1731864.1 protein Simiate [Ditylenchus destructor]
|
No
|
0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.918|GO:0005575_0.896|GO:0110165_0.875|GO:0003674_0.852|GO:0009987_0.850|GO:0005622_0.822|GO:0065007_0.801|GO:0005488_0.798|GO:0016020_0.791|GO:0043226_0.784|GO:0050789_0.781|GO:0050794_0.772|GO:0043229_0.771|GO:0043227_0.737|GO:0005515_0.732|GO:0032502_0.731|GO:0048856_0.731|GO:0071840_0.729|GO:0032501_0.728|GO:0043231_0.724|GO:0016043_0.720|GO:0007275_0.717|GO:0048731_0.705|GO:0048869_0.701|GO:0030154_0.700|GO:0048468_0.694|GO:0044085_0.690|GO:0006996_0.689|GO:0065008_0.688|GO:0007399_0.686|GO:0022607_0.685|GO:0009653_0.684|GO:0051128_0.684|GO:0022008_0.683|GO:0043933_0.682|GO:0065003_0.681|GO:0030182_0.680|GO:0048699_0.680|GO:0007010_0.677|GO:0030030_0.677|GO:0048666_0.677|GO:0120036_0.677|GO:0031344_0.675|GO:0044087_0.675|GO:0120035_0.675|GO:0000902_0.674|GO:0030029_0.674|GO:0030036_0.674|GO:0031175_0.674|GO:0033043_0.674|GO:0097435_0.674|GO:0007015_0.670|GO:0008064_0.670|GO:0008154_0.670|GO:0016358_0.670|GO:0030031_0.670|GO:0030041_0.670|GO:0030832_0.670|GO:0030833_0.670|GO:0032271_0.670|GO:0032535_0.670|GO:0032956_0.670|GO:0032970_0.670|GO:0043254_0.670|GO:0046847_0.670|GO:0048667_0.670|GO:0048812_0.670|GO:0048813_0.670|GO:0048858_0.670|GO:0051258_0.670|GO:0051489_0.670|GO:0051493_0.670|GO:0060491_0.670|GO:0090066_0.670|GO:0110053_0.670|GO:0120031_0.670|GO:0120032_0.670|GO:0120039_0.670|GO:1902903_0.670|GO:0044877_0.659|GO:0008092_0.654|GO:0003779_0.650|GO:0003785_0.650|GO:0051015_0.650|GO:0071944_0.647|GO:0005634_0.642|GO:0043228_0.636|GO:0043232_0.630|GO:0005886_0.624|GO:0031974_0.592|GO:0043233_0.592|GO:0070013_0.592|GO:0031981_0.578|GO:0099080_0.561|GO:0005654_0.560|GO:0042995_0.559|GO:0098590_0.557|GO:0005856_0.555|GO:0120025_0.555|GO:0099081_0.551|GO:0043005_0.550|GO:0099512_0.550|GO:0099513_0.548|GO:0036477_0.546|GO:0030424_0.545|GO:0005884_0.540|GO:0015629_0.540|GO:0016604_0.540|GO:0016607_0.540|GO:0030027_0.540|GO:0030175_0.540|GO:0030425_0.540|GO:0030426_0.540|GO:0030427_0.540|GO:0031252_0.540|GO:0032433_0.540|GO:0097447_0.540|GO:0098858_0.540|GO:0150034_0.540
|
IPR039169+33-165+
|
— | — | — |
PTHR13651+33-165+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;165-207
|
1.000
|
2-164
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.951
|
22741.840
|
9.191
|
6.500
|
27.536
|
7.729
|
49.758
|
50.242
|
15.942
|
11.594
|
53.623
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
608.307
|
541.938
|
464.643
|
486.881
|
593.914
|
527.875
|
923.844
|
483.866
|
364.713
|
879.199
|
658.705
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.453
|
-0.292
|
0.177
|
0.255
|
-0.156
|
0.819
|
— |
1.078
|
— | — | — | — | — |
No JSON data available for plots.