Hg_chrom5_TN10mRNA_10049
Organism: Heterodera glycines Gene Locus: chr5:5596558-5599486 Feature type: polypeptideProtein Sequence
Length: 409
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.535 | 0.682 | 0.667 | 0.59 | 0.937 | 1.191 | 1.135 | 0.978 | 1.521 | 1.189 | 1.111 | 1.582 | 0.951 | 0.846 | 0.599 | 0.943 | 0.641 | 1.148 | 0.188 | 0.575 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9458
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.124
|
0.963
|
0.003
|
0.249
|
0.091
|
0.038
|
0.042
|
0.042
|
0.060
|
0.078
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009654
|
1.000
|
1.000
|
Hsc_gene_6930.t1
|
Hsc_gene_6930.t1
|
— |
Q22100.2 Acetyl-CoA acetyltransferase homolog, mitochondrial [Caenorhabditis elegans]
|
KAI1718499.1 acetyl-CoA acetyltransferase [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016746|GO:0016747
|
GO:0005575_0.841|GO:0110165_0.811|GO:0005622_0.713|GO:0016020_0.693|GO:0003674_0.680|GO:0005737_0.670|GO:0008150_0.645|GO:0043226_0.621|GO:0043227_0.583|GO:0043229_0.582|GO:0003824_0.549|GO:0043231_0.537
|
IPR002155+20-409_26-408_27-407+|IPR016039+21-409_25-287_286-406+|IPR020610+390-403+|IPR020613+357-373+|IPR020616+26-281+|IPR020617+289-408+
|
— |
PF00108+26-281+Thiolase,_N-terminal_domain|PF02803+289-408+Thiolase,_C-terminal_domain
|
G3DSA:3.40.47.10:FF:000007+20-409+acetyl-CoA_acetyltransferase,_mitochondrial
|
PTHR18919+25-408+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-409
|
2iby_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.788
|
43147.000
|
8.368
|
8.000
|
21.516
|
7.579
|
39.609
|
60.391
|
12.225
|
9.291
|
53.545
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
steelblue
|
1756.284
|
1083.012
|
1667.377
|
1667.443
|
2400.938
|
2669.411
|
2396.309
|
2294.847
|
1746.224
|
1056.822
|
1352.280
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.394
|
0.486
|
0.108
|
0.494
|
0.168
|
— |
-0.324
|
— | — | — | — | — | — |
No JSON data available for plots.