Hg_chrom5_TN10mRNA_10051
Organism: Heterodera glycines Gene Locus: chr5:5607333-5609286 Feature type: polypeptideProtein Sequence
Length: 396
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.615 | 0.646 | 0.826 | 0.435 | 0.842 | 1.425 | 1.052 | 0.253 | 1.347 | 1.092 | 0.497 | 1.04 | 0.912 | 0.826 | 1.082 | 1.19 | 0.787 | 1.53 | 0.389 | 0.52 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9460
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.368
|
0.537
|
0.035
|
0.729
|
0.087
|
0.252
|
0.069
|
0.156
|
0.071
|
0.093
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009656
|
1.000
|
1.000
|
Hsc_gene_6927.t1
|
Hsc_gene_6927.t1
|
— |
Q6AZA0.1 Acetyl-CoA acetyltransferase, mitochondrial [Danio rerio]
|
KAI1720262.1 acetyl-CoA acetyltransferase [Ditylenchus destructor]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016746|GO:0016747
|
GO:0005575_0.811|GO:0110165_0.774|GO:0003674_0.690|GO:0008150_0.683|GO:0016020_0.663|GO:0005622_0.643|GO:0005737_0.643|GO:0003824_0.583|GO:0043226_0.550|GO:0043227_0.519|GO:0043229_0.514|GO:0016740_0.509
|
IPR002155+9-396_14-395_15-394+|IPR016039+9-395_12-271_274-394+|IPR020610+377-390+|IPR020613+344-360+|IPR020615+93-111+|IPR020616+13-269+|IPR020617+276-395+
|
— |
PF00108+13-269+Thiolase,_N-terminal_domain|PF02803+276-395+Thiolase,_C-terminal_domain
|
— |
PTHR18919+12-395+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-396
|
6bja_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.699
|
41482.360
|
5.250
|
-3.000
|
18.687
|
6.061
|
40.152
|
59.848
|
9.091
|
9.596
|
58.838
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
6631.523
|
3164.853
|
3679.237
|
6601.500
|
17791.467
|
12737.685
|
10122.378
|
3704.612
|
1776.891
|
6004.596
|
4192.723
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.924
|
0.952
|
1.398
|
-0.468
|
-0.320
|
-1.888
|
1.594
|
-1.859
|
— |
1.763
|
— | — |
No JSON data available for plots.