Hg_chrom5_TN10mRNA_10052
Organism: Heterodera glycines Gene Locus: chr5:5609422-5611419 Feature type: polypeptideProtein Sequence
Length: 216
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.754 | 0.538 | 0.673 | 0.16 | 1.312 | 1.425 | 0.661 | 1.62 | 0.412 | 1.126 | 1.613 | 3.54 | 0.643 | 0.801 | 2.268 | 0.794 | 0.607 | 0.701 | 1.781 | 1.225 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9461
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.739
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
RRHAVKKAKNEAKFRQR,PRILKIRRHKIKKMKRKKRYKKYWYQYQRRHAVKKAKNE
|
7-28
|
0.992
|
11-51
|
1.000
|
— | — |
0.000
|
— | — |
0.220
|
0.911
|
0.003
|
0.113
|
0.032
|
0.011
|
0.015
|
0.015
|
0.028
|
0.028
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009657
|
1.000
|
1.000
|
Hsc_gene_6926.t1
|
Hsc_gene_6926.t1
|
— | — |
NP_496878.1 DUF1713 domain-containing protein [Caenorhabditis elegans];AAG50217.1 2O16 [Caenorhabditis elegans];CAC35867.1 DUF1713 domain-containing protein [Caenorhabditis elegans]
|
No
|
0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
180-216
|
1.000
|
1-179
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.753
|
25730.830
|
10.831
|
25.500
|
36.574
|
12.037
|
53.704
|
46.296
|
25.000
|
11.574
|
36.574
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
orange
|
2475.169
|
3015.638
|
2025.219
|
2358.306
|
2909.575
|
2154.416
|
2065.794
|
2327.882
|
3323.323
|
2015.059
|
2575.743
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.804
|
-0.492
|
0.328
|
0.271
|
-0.419
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.