Hg_chrom5_TN10mRNA_10055
Organism: Heterodera glycines Gene Locus: chr5:5615573-5616904 Feature type: polypeptideProtein Sequence
Length: 72
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.646 | 0.323 | 0.758 | 1.916 | 2.546 | 0.712 | 0.331 | 2.778 | 0.926 | 0.938 | 1.894 | 2.451 | 0.772 | 1.068 | 0.85 | 0.397 | 0.683 | 1.052 | 0.0 | 0.817 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9463
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.240
|
0.566
|
0.088
|
0.358
|
0.103
|
0.064
|
0.128
|
0.025
|
0.064
|
0.169
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009660
|
1.000
|
1.000
|
Hsc_gene_6923.t1
|
Hsc_gene_6923.t1
|
— | — |
KAI6227812.1 Cytochrome b-c1 complex subunit 6 [Aphelenchoides besseyi]
|
No
|
0.320
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005750|GO:0006122
|
— |
IPR003422+1-72_3-72+|IPR023184+11-72+|IPR036811+2-72_4-72+
|
— |
PF02320+11-72+Ubiquinol-cytochrome_C_reductase_hinge_protein
|
— |
PTHR15336+3-72+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-72
|
7dkf_T1
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.817
|
8416.740
|
6.471
|
0.000
|
41.667
|
11.111
|
52.778
|
47.222
|
22.222
|
19.444
|
38.889
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1948.010
|
492.611
|
1477.330
|
2112.329
|
3081.736
|
2701.588
|
1695.288
|
1780.701
|
1443.330
|
2436.953
|
2011.115
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.354
|
1.964
|
0.625
|
0.513
|
-0.176
|
-0.660
|
-0.706
|
— | — | — | — | — | — |
No JSON data available for plots.