Hg_chrom5_TN10mRNA_10058
Organism: Heterodera glycines Gene Locus: chr5:5624194-5625794 Feature type: polypeptideProtein Sequence
Length: 259
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.988 | 0.718 | 0.913 | 0.399 | 1.351 | 1.188 | 0.827 | 0.579 | 0.686 | 1.096 | 1.755 | 1.136 | 1.18 | 1.04 | 1.418 | 1.434 | 1.013 | 0.41 | 0.0 | 0.341 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9466
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.549
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKPR,RQRKRVK,KRSLDELTLDEVERKAKKA,RKAKKAKSGGAEENGGREKEKKRKKEKKKKKKDREKRTE
|
16-37
|
0.975
|
7-46
|
0.988
|
— | — |
0.000
|
— | — |
0.957
|
0.027
|
0.007
|
0.138
|
0.043
|
0.014
|
0.031
|
0.013
|
0.072
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009663
|
1.000
|
1.000
|
Hsc_gene_6919.t1
|
Hsc_gene_6919.t1
|
— | — |
KAI1720247.1 mediator of RNA pol II transcription subunit 19 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003712|GO:0006357|GO:0016592
|
GO:0005575_0.780|GO:0110165_0.780|GO:0005622_0.747|GO:0043226_0.738|GO:0016020_0.725|GO:0043229_0.725|GO:0043227_0.674|GO:0043231_0.656|GO:0005634_0.595|GO:0032991_0.535|GO:0031974_0.517|GO:0031981_0.512|GO:0043233_0.512|GO:0070013_0.512
|
IPR019403+35-232_38-234+
|
— |
PF10278+38-234+Mediator_of_RNA_pol_II_transcription_subunit_19
|
— |
PTHR22536+35-232+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
119-259
|
1.000
|
1-118
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.821
|
28625.430
|
10.359
|
15.500
|
32.819
|
6.564
|
56.757
|
43.243
|
19.691
|
13.127
|
49.035
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
1163.686
|
1277.019
|
828.388
|
1027.934
|
1367.938
|
1041.344
|
1304.839
|
971.797
|
726.341
|
1614.147
|
1233.659
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.855
|
-0.450
|
0.421
|
0.380
|
-0.379
|
0.337
|
— |
0.569
|
— | — | — | — | — |
No JSON data available for plots.