Hg_chrom5_TN10mRNA_10059
Organism: Heterodera glycines Gene Locus: chr5:5626210-5627985 Feature type: polypeptideProtein Sequence
Length: 352
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.991 | 0.925 | 1.033 | 0.686 | 0.994 | 0.801 | 1.116 | 0.994 | 1.326 | 0.729 | 0.99 | 1.838 | 1.499 | 0.437 | 1.102 | 1.015 | 1.071 | 1.334 | 0.219 | 0.752 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9467
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.836
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.418
|
0.310
|
0.170
|
0.538
|
0.087
|
0.287
|
0.056
|
0.018
|
0.228
|
0.199
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009664
|
1.000
|
1.000
|
Hsc_gene_6918.t1
|
Hsc_gene_6918.t1
|
— |
P27442.1 GMP reductase [Ascaris suum]
|
P27442.1 GMP reductase [Ascaris lumbricoides]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0003920|GO:0009117|GO:0016491|GO:1902560
|
GO:0008150_0.783|GO:0005575_0.686|GO:0110165_0.677|GO:0003674_0.656|GO:0005622_0.559|GO:0009987_0.558|GO:0005737_0.548|GO:0003824_0.503
|
IPR001093+10-339_10-342+|IPR005993+1-351_2-348_6-347+|IPR013785+2-348+|IPR015875+179-191+|IPR050139+1-350+
|
SM01240+8-350+
|
PF00478+10-342+IMP_dehydrogenase_/_GMP_reductase_domain
|
G3DSA:3.20.20.70:FF:000012+1-348+GMP_reductase
|
PTHR43170+1-350+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-352
|
2bwg_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.729
|
38423.770
|
7.642
|
4.500
|
25.568
|
10.227
|
46.307
|
53.693
|
13.920
|
11.648
|
54.261
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
lightcyan
|
1984.847
|
1451.403
|
1218.641
|
2671.382
|
3213.567
|
2249.541
|
2200.534
|
1295.159
|
745.105
|
2762.291
|
1897.783
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.481
|
0.743
|
1.241
|
0.235
|
-0.499
|
— |
-0.901
|
0.907
|
— | — | — | — | — |
No JSON data available for plots.