SCN Proteipedia

Hg_chrom5_TN10mRNA_10061

Organism: Heterodera glycines Gene Locus: chr5:5636331-5639092 Feature type: polypeptide

Protein Sequence

Length: 600

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.93	0.853	0.485	1.552	0.861	1.709	0.794	2.833	0.778	1.171	0.833	1.078	1.481	1.314	0.986	1.69	0.765	0.404	0.385	0.245	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9469	—	—	0.889	1.000	1.000	1.000	1.000	—	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	15-Not_Clustered	0.330

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	AAKGGAKRR	1-21	0.992	51-72	0.975	—	—	0.000	—	—	0.775	0.109	0.006	0.424	0.044	0.031	0.087	0.019	0.059	0.083

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009666	1.000	1.000	Hsc_gene_6916.t1	Hsc_gene_6916.t1	—	—	KAI1732881.1 zinc-finger double domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.838\|GO:0009987_0.804\|GO:0003674_0.764\|GO:0005488_0.764\|GO:0097159_0.737\|GO:0003676_0.723\|GO:0003677_0.704\|GO:0065007_0.697\|GO:0050789_0.691\|GO:0005575_0.688\|GO:0050794_0.686\|GO:0110165_0.678\|GO:0016020_0.662\|GO:0008152_0.659\|GO:0019222_0.659\|GO:0031323_0.659\|GO:0044237_0.659\|GO:0044238_0.646\|GO:0080090_0.646\|GO:0043170_0.644\|GO:0060255_0.644\|GO:0005622_0.637\|GO:0043226_0.637\|GO:0043229_0.637\|GO:0009058_0.633\|GO:0009889_0.633\|GO:0031326_0.633\|GO:0044249_0.633\|GO:0009059_0.631\|GO:0010556_0.631\|GO:0010467_0.626\|GO:0010468_0.626\|GO:0006139_0.620\|GO:0016070_0.620\|GO:0019219_0.620\|GO:0051252_0.620\|GO:0090304_0.620\|GO:0006351_0.617\|GO:0006355_0.617\|GO:0032774_0.617\|GO:0034654_0.617\|GO:0141187_0.617\|GO:2001141_0.617\|GO:0043565_0.609\|GO:0043227_0.600\|GO:0003690_0.596\|GO:1990837_0.596\|GO:0043231_0.593\|GO:0005634_0.564\|GO:0140110_0.534	IPR013087+76-100_169-194_200-222_200-227_202-222_228-250_228-255_230-250_256-278_256-283_258-278_284-306_284-311_286-306_311-330_311-331_456-479_458-479+\|IPR036236+170-222_208-265_254-306+\|IPR050636+76-330+	SM00355+76-100_169-194_200-222_228-250_256-278_284-306_311-331_456-479+	PF00096+200-222_256-278_284-306+Zinc_finger,_C2H2_type	G3DSA:3.30.160.60:FF:000690+279-306+Zinc_finger_protein_354C\|G3DSA:3.30.160.60:FF:001273+224-250+Zinc_finger_protein\|G3DSA:3.30.160.60:FF:001513+251-278+Zinc_finger,_C2H2_type	PTHR47772+76-330+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	90-150;329-442;593-600	3.000	1-89;151-328;443-592	5wjq_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.947	65767.440	8.537	32.000	23.833	12.333	50.667	49.333	16.000	7.833	51.500

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	darkorange	520.848	386.388	321.265	1178.122	615.265	365.151	354.882	1648.886	224.475	284.119	258.557

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.496	1.472	1.983	-0.969	-0.738	—	2.071	-2.075	—	—	—	—	—

No JSON data available for plots.

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