Hg_chrom5_TN10mRNA_10064
Organism: Heterodera glycines Gene Locus: chr5:5647532-5649955 Feature type: polypeptideProtein Sequence
Length: 380
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.765 | 1.53 | 1.005 | 0.181 | 2.018 | 1.822 | 0.219 | 1.184 | 0.76 | 1.565 | 1.276 | 1.393 | 0.292 | 0.607 | 1.665 | 1.278 | 0.777 | 0.558 | 0.0 | 0.542 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9472
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.511
|
0.080
|
0.012
|
0.730
|
0.054
|
0.072
|
0.218
|
0.009
|
0.236
|
0.083
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009669
|
1.000
|
1.000
|
Hsc_gene_6913.t1
|
Hsc_gene_6913.t1
|
— |
Q2T9W6.1 Leucine-rich repeat flightless-interacting protein 2 [Bos taurus]
|
KAI1714833.1 LRRFIP family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006355
|
GO:0008150_0.801|GO:0009987_0.776|GO:0065007_0.755|GO:0050789_0.750|GO:0050794_0.737|GO:0050896_0.549|GO:0051716_0.549|GO:0032501_0.530|GO:0007154_0.513|GO:0023052_0.513
|
IPR019139+87-176_87-307+
|
— |
PF09738+87-307+LRRFIP_family
|
— |
PTHR19212+87-176+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-64;168-380
|
1.000
|
65-167
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.562
|
43942.140
|
6.605
|
0.500
|
36.579
|
5.263
|
63.947
|
36.053
|
18.947
|
17.632
|
41.579
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1203.861
|
1721.957
|
1291.972
|
874.449
|
1073.619
|
1248.562
|
1422.414
|
1794.219
|
1833.596
|
356.497
|
989.539
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.644
|
-1.115
|
-0.454
|
0.265
|
0.232
|
0.200
|
0.421
|
— | — | — | — | — | — |
No JSON data available for plots.