Hg_chrom5_TN10mRNA_10065
Organism: Heterodera glycines Gene Locus: chr5:5650461-5654215 Feature type: polypeptideProtein Sequence
Length: 621
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.049 | 1.123 | 0.937 | 0.888 | 1.557 | 1.569 | 0.364 | 0.886 | 0.966 | 1.893 | 0.659 | 1.8 | 0.85 | 0.557 | 1.413 | 0.736 | 0.792 | 1.025 | 0.248 | 0.71 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9473
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.863
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.379
|
0.091
|
0.014
|
0.584
|
0.202
|
0.484
|
0.387
|
0.019
|
0.101
|
0.220
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009670
|
1.000
|
1.000
|
Hsc_gene_6912.t1
|
Hsc_gene_6912.t1
|
— |
Q54CT0.1 Conserved oligomeric Golgi complex subunit 6 [Dictyostelium discoideum]
|
KAF7640488.1 Conserved oligomeric Golgi complex subunit 6 [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006891|GO:0017119
|
GO:0005575_0.810|GO:0110165_0.803|GO:0008150_0.800|GO:0009987_0.758|GO:0005622_0.752|GO:0016020_0.714|GO:0043226_0.684|GO:0005737_0.680|GO:0043229_0.653|GO:0043227_0.631|GO:0071944_0.605|GO:0005886_0.595|GO:0043231_0.592
|
IPR010490+12-614_26-618+|IPR048368+39-123+|IPR048369+172-613+
|
SM01087+26-618+
|
PF06419+39-123+Conserved_oligomeric_complex_COG6,_N-terminal|PF20653+172-613+Conserved_Oligomeric_Golgi_complex_subunit_6,_C-terminal
|
— |
PTHR21506+12-614+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
618-621
|
1.000
|
1-617
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.747
|
70622.140
|
4.976
|
-14.500
|
27.536
|
7.568
|
48.470
|
51.530
|
13.043
|
14.493
|
44.283
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
darkturquoise
|
1962.773
|
2467.437
|
1871.082
|
1645.279
|
1738.988
|
1812.873
|
2122.359
|
2076.768
|
2267.369
|
1736.058
|
1963.763
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.629
|
-0.722
|
— | — | — |
0.238
|
— |
0.174
|
— | — | — | — | — |
No JSON data available for plots.