Hg_chrom5_TN10mRNA_10067
Organism: Heterodera glycines Gene Locus: chr5:5664530-5667634 Feature type: polypeptideProtein Sequence
Length: 581
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.66 | 1.201 | 0.876 | 0.297 | 1.779 | 1.986 | 0.758 | 0.947 | 1.224 | 1.023 | 0.887 | 1.012 | 0.956 | 0.993 | 1.791 | 1.057 | 0.762 | 0.548 | 1.059 | 0.506 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9475
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.512
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
KRRS,KSGGKR,RREQTQWEEQQRRARE,RRIAQKAREQHRKCLR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.351
|
0.129
|
0.011
|
0.718
|
0.207
|
0.360
|
0.166
|
0.017
|
0.337
|
0.040
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009672
|
1.000
|
1.000
|
Hsc_gene_6910.t2
|
Hsc_gene_6910.t1;Hsc_gene_6910.t2
|
— |
Q08CX2.1 SH2 domain-containing protein 4A [Xenopus tropicalis]
|
KAI6176144.1 SH2 domain-containing protein 4B [Aphelenchoides bicaudatus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.867|GO:0110165_0.862|GO:0005622_0.784|GO:0008150_0.701|GO:0009987_0.668|GO:0005737_0.603|GO:0003674_0.525
|
IPR000980+453-537_455-531_455-548+|IPR036860+441-556_453-536+
|
SM00252+453-537+
|
PF00017+455-531+SH2_domain
|
— |
PTHR14388+1-574+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
96-386;552-581
|
2.000
|
1-95;387-551
|
2cs0_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.703
|
66685.430
|
6.592
|
0.500
|
32.014
|
8.434
|
56.971
|
43.029
|
16.523
|
15.491
|
43.718
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1854.347
|
4547.902
|
897.617
|
973.151
|
980.653
|
1147.223
|
1831.047
|
1057.182
|
1032.913
|
3050.043
|
2185.559
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.571
|
-2.362
|
0.226
|
— |
0.241
|
0.685
|
-0.224
|
0.936
|
— | — | — | — | — |
No JSON data available for plots.