Hg_chrom5_TN10mRNA_10068
Organism: Heterodera glycines Gene Locus: chr5:5668332-5668821 Feature type: polypeptideProtein Sequence
Length: 114
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.408 | 1.02 | 1.116 | 0.605 | 0.731 | 2.699 | 0.522 | 0.877 | 1.559 | 1.541 | 0.266 | 2.58 | 0.975 | 0.337 | 1.79 | 1.378 | 0.719 | 1.462 | 0.675 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9476
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.563
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
lysosome_vacuole|golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.116
|
0.052
|
0.003
|
0.160
|
0.384
|
0.748
|
0.657
|
0.006
|
0.538
|
0.015
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009673
|
1.000
|
1.000
|
Hsc_gene_6909.t1
|
Hsc_gene_6909.t1
|
— |
Q3T0Y8.1 Vesicle-associated membrane protein 8 [Bos taurus]
|
KAI1727205.1 synaptobrevin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0016192
|
GO:0005575_0.956|GO:0110165_0.952|GO:0016020_0.926|GO:0005886_0.880|GO:0071944_0.880|GO:0008150_0.872|GO:0009987_0.783|GO:0005622_0.782|GO:0043226_0.770|GO:0043227_0.746|GO:0005737_0.745|GO:0005773_0.745|GO:0043229_0.745|GO:0043231_0.745|GO:0051179_0.709|GO:0012505_0.698|GO:0006810_0.674|GO:0051234_0.674|GO:0065007_0.593|GO:0050789_0.576|GO:0016043_0.572|GO:0071840_0.572|GO:0031982_0.545|GO:0051641_0.544|GO:0061024_0.517|GO:0006996_0.510|GO:0050896_0.506|GO:0097708_0.503
|
IPR001388+29-48_49-68_85-104+|IPR016444+5-113_14-108+|IPR042855+24-84_24-107+
|
— |
PF00957+24-107+Synaptobrevin
|
— |
PTHR45701+14-108+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-19
|
1.000
|
20-114
|
1gl2_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.625
|
13000.970
|
7.135
|
1.000
|
22.807
|
6.140
|
51.754
|
48.246
|
12.281
|
10.526
|
45.614
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
536.475
|
794.269
|
367.247
|
399.887
|
517.389
|
398.788
|
868.846
|
929.810
|
79.843
|
683.607
|
424.851
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.344
|
-1.127
|
0.233
|
0.340
|
-0.361
|
1.134
|
1.115
|
— |
-3.234
|
— | — | — | — |
No JSON data available for plots.