Hg_chrom5_TN10mRNA_10069
Organism: Heterodera glycines Gene Locus: chr5:5669777-5675066 Feature type: polypeptideProtein Sequence
Length: 1,037
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.875 | 1.099 | 0.964 | 0.565 | 1.077 | 1.286 | 0.677 | 1.205 | 1.029 | 1.16 | 0.672 | 1.532 | 1.071 | 1.354 | 1.161 | 1.24 | 0.901 | 0.862 | 1.261 | 0.851 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9477
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.552
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
KRHR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.153
|
0.050
|
0.006
|
0.237
|
0.201
|
0.562
|
0.486
|
0.015
|
0.638
|
0.215
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009674
|
1.000
|
1.000
|
Hsc_gene_6908.t1
|
Hsc_gene_6908.t1
|
— |
O14638.2 Ectonucleotide pyrophosphatase/phosphodiesterase family member 3 [Homo sapiens]
|
KHN78351.1 Ectonucleotide pyrophosphatase/phosphodiesterase C27A7.1 [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0003674_0.841|GO:0008150_0.828|GO:0005575_0.813|GO:0110165_0.810|GO:0009987_0.722|GO:0016020_0.664|GO:0071944_0.654|GO:0005886_0.640|GO:0003824_0.637|GO:0016787_0.624|GO:0008152_0.546|GO:0044238_0.508
|
IPR002591+200-521+|IPR017850+191-559_200-570+|IPR044929+874-1034+
|
— |
PF01663+200-521+Type_I_phosphodiesterase_/_nucleotide_pyrophosphatase
|
— |
PTHR10151+151-595+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-93;704-854
|
2.000
|
94-703;855-1037
|
6wfj_BcB
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.720
|
115987.050
|
6.221
|
-4.500
|
24.301
|
10.800
|
48.216
|
51.784
|
12.536
|
11.765
|
51.784
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
853.458
|
614.466
|
1221.593
|
1153.222
|
491.068
|
338.938
|
608.301
|
712.507
|
813.237
|
1196.417
|
1032.197
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.763
|
0.771
|
— |
-1.264
|
-0.520
|
0.854
|
0.967
|
— | — | — | — | — | — |
No JSON data available for plots.