Hg_chrom5_TN10mRNA_10071
Organism: Heterodera glycines Gene Locus: chr5:5677087-5679980 Feature type: polypeptideProtein Sequence
Length: 400
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.988 | 1.047 | 0.955 | 0.69 | 1.292 | 1.026 | 0.655 | 2.25 | 1.222 | 0.946 | 0.909 | 2.941 | 1.25 | 0.913 | 1.224 | 0.571 | 0.615 | 1.174 | 0.962 | 0.735 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9479
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — |
Hsc_gene_6906
|
— |
17-Not_Clustered
|
0.950
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
mitochondrion
|
— | — | — | — | — | — |
1-24
|
0.927
|
0.603
|
0.000
|
0.000
|
0.417
|
0.479
|
0.044
|
0.270
|
0.177
|
0.252
|
0.143
|
0.010
|
0.334
|
0.333
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009676
|
1.000
|
1.000
|
Hsc_gene_6906.t1
|
Hsc_gene_6906.t1
|
— |
Q4R945.1 Dual specificity protein kinase TTK [Macaca fascicularis]
|
KAF7640495.1 Protein kinase domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.923|GO:0009987_0.836|GO:0005575_0.809|GO:0110165_0.801|GO:0003674_0.798|GO:0003824_0.754|GO:0005622_0.678|GO:0016740_0.665|GO:0065007_0.659|GO:0050789_0.648|GO:0140096_0.631|GO:0050794_0.618|GO:0016772_0.591|GO:0050896_0.588|GO:0016301_0.574|GO:0016773_0.573|GO:0004672_0.565|GO:0005737_0.539|GO:0016020_0.510|GO:0051716_0.502
|
IPR000719+63-374_63-375_67-367+|IPR011009+55-368+
|
SM00220+63-374+
|
PF00069+67-367+Protein_kinase_domain
|
— |
PTHR22974+39-368+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-400
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.494
|
45653.550
|
6.987
|
5.000
|
29.500
|
12.750
|
45.750
|
54.250
|
16.500
|
13.000
|
46.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
2840.245
|
15.338
|
1144.238
|
1333.282
|
431.208
|
52.728
|
89.656
|
73.481
|
12901.068
|
1572.797
|
6427.770
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.994
|
6.307
|
0.330
|
-1.659
|
-3.017
|
0.777
|
— | — |
2.912
|
-3.099
|
— | — | — |