Hg_chrom5_TN10mRNA_10076
Organism: Heterodera glycines Gene Locus: chr5:5694418-5696814 Feature type: polypeptideProtein Sequence
Length: 520
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.559 | 1.431 | 0.839 | 0.531 | 1.378 | 1.085 | 0.549 | 0.962 | 1.538 | 1.351 | 1.02 | 1.244 | 1.229 | 0.703 | 1.727 | 1.181 | 0.851 | 0.787 | 0.592 | 0.622 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9484
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KRVK,RKIEPLIHVHENILQKLRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.244
|
0.208
|
0.031
|
0.686
|
0.145
|
0.256
|
0.246
|
0.009
|
0.528
|
0.088
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009680
|
1.000
|
1.000
|
Hsc_gene_6899.t1
|
Hsc_gene_6899.t1;Hsc_gene_6899.t2
|
— |
Q07139.2 Protein ECT2 [Mus musculus]
|
KAI1724824.1 rhoGEF domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005085|GO:0005096|GO:0005634|GO:0005737|GO:0043547|GO:2000431
|
GO:0008150_0.945|GO:0009987_0.886|GO:0005575_0.872|GO:0110165_0.863|GO:0005622_0.834|GO:0065007_0.757|GO:0050789_0.748|GO:0050794_0.706|GO:0003674_0.701|GO:0005737_0.658|GO:0005488_0.644|GO:0050896_0.614|GO:0005515_0.608|GO:0043226_0.603|GO:0051716_0.593|GO:0016020_0.582|GO:0043229_0.554|GO:0071840_0.543|GO:0016043_0.537|GO:0007154_0.526|GO:0023052_0.526
|
IPR000219+65-256_66-254_69-254_69-255+|IPR026817+40-391+|IPR035899+38-276_54-276+|IPR049395+283-410+
|
SM00325+69-255+
|
PF00621+69-254+RhoGEF_domain|PF21242+283-410+ECT2,_PH_domain
|
— |
PTHR16777+40-391+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-520
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.833
|
59825.380
|
9.481
|
17.000
|
30.000
|
9.231
|
53.846
|
46.154
|
17.115
|
12.885
|
44.038
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkorange
|
604.404
|
187.520
|
499.065
|
660.797
|
908.834
|
662.356
|
1187.656
|
475.113
|
512.272
|
542.059
|
529.293
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.182
|
1.681
|
0.515
|
0.428
|
-0.443
|
0.853
|
-0.588
|
1.466
|
— | — | — | — | — |
No JSON data available for plots.