Hg_chrom5_TN10mRNA_10077
Organism: Heterodera glycines Gene Locus: chr5:5696978-5700081 Feature type: polypeptideProtein Sequence
Length: 738
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.662 | 1.134 | 1.084 | 0.654 | 1.039 | 0.973 | 0.936 | 2.1 | 0.903 | 1.007 | 0.862 | 1.355 | 1.807 | 1.225 | 1.355 | 0.755 | 0.8 | 0.965 | 1.563 | 0.558 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9485
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
AKKERKDKPTKVR,KRSGAPPCECFYHKRFPR
|
— | — | — | — | — |
0.827
|
0.234
|
0.000
|
— |
0.331
|
0.146
|
0.032
|
0.190
|
0.319
|
0.215
|
0.196
|
0.026
|
0.237
|
0.509
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009681
|
1.000
|
1.000
|
Hsc_gene_6898.t1
|
Hsc_gene_6898.t1
|
— |
Q0IP28.1 Laccase-25 [Oryza sativa Japonica Group]
|
KAI1718158.1 multicopper oxidase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005507|GO:0016491
|
GO:0008150_0.840|GO:0005575_0.600|GO:0110165_0.599|GO:0003674_0.510
|
IPR001117+311-400+|IPR008972+94-233_128-236_267-451_311-412_517-732_577-693+|IPR011706+577-694+|IPR011707+126-234+|IPR045087+133-693+
|
— |
PF00394+311-400+Multicopper_oxidase|PF07731+577-694+Multicopper_oxidase|PF07732+126-234+Multicopper_oxidase
|
— |
PTHR11709+133-693+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-738
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.769
|
83993.270
|
7.728
|
16.500
|
28.726
|
14.634
|
47.561
|
52.439
|
16.531
|
12.195
|
49.187
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
917.259
|
105.108
|
1006.408
|
457.206
|
366.195
|
177.906
|
169.131
|
1410.276
|
1693.661
|
1358.176
|
1501.956
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.030
|
1.983
|
-1.030
|
-0.351
|
-1.027
|
— |
2.884
|
-2.918
|
— |
-1.720
|
— | — | — |