Hg_chrom5_TN10mRNA_10079
Organism: Heterodera glycines Gene Locus: chr5:5705538-5707863 Feature type: polypeptideProtein Sequence
Length: 516
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.969 | 0.631 | 0.951 | 0.936 | 1.227 | 0.994 | 0.831 | 1.647 | 0.904 | 0.943 | 0.763 | 1.824 | 1.507 | 0.969 | 1.226 | 1.052 | 1.017 | 1.233 | 0.745 | 0.342 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9487
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.903
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
chloroplast
|
RKKK,KRMPLAEGRHGRKSRA,RKSRALVEAEMPLERGDKR
|
61-83
|
0.951
|
51-79
|
0.978
|
— |
0.706
|
0.042
|
1.000
|
— |
0.106
|
0.016
|
0.029
|
0.217
|
0.297
|
0.352
|
0.514
|
0.048
|
0.780
|
0.146
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004121
|
2.000
|
1.000
|
Hsc_gene_6896.t1
|
Hsc_gene_6896.t1
|
— | — |
KAF7639012.1 ZP domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.937|GO:0110165_0.937|GO:0071944_0.865|GO:0030312_0.558|GO:0031012_0.546|GO:0062023_0.545|GO:0060102_0.540
|
IPR001507+41-284_41-288_64-274+|IPR042235+185-317+|IPR051962+17-422+
|
SM00241+41-288+
|
PF00100+64-274+Zona_pellucida-like_domain
|
— |
PTHR22907+17-422+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
279-452
|
2.000
|
1-278;453-516
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.586
|
57064.970
|
6.545
|
0.500
|
26.938
|
10.853
|
47.093
|
52.907
|
14.341
|
12.597
|
52.713
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
turquoise
|
281.262
|
31.586
|
58.588
|
34.547
|
47.618
|
113.110
|
41.591
|
32.018
|
84.974
|
1032.144
|
626.214
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.656
|
— |
-0.649
|
0.430
|
1.265
|
-1.435
|
-1.935
|
— | — | — | — | — | — |