Hg_chrom5_TN10mRNA_10082
Organism: Heterodera glycines Gene Locus: chr5:5709939-5714931 Feature type: polypeptideProtein Sequence
Length: 993
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.796 | 1.007 | 0.934 | 2.743 | 1.091 | 1.291 | 0.971 | 1.007 | 0.716 | 0.667 | 0.824 | 0.829 | 1.706 | 1.317 | 1.48 | 1.079 | 0.644 | 0.656 | 0.775 | 0.563 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9489
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
RHRR
|
— | — | — | — |
1-21
|
0.975
|
0.531
|
0.000
|
0.000
|
0.299
|
0.159
|
0.026
|
0.358
|
0.154
|
0.248
|
0.114
|
0.138
|
0.193
|
0.850
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009684
|
1.000
|
1.000
|
Hsc_gene_6894.t1
|
— | — | — |
KAI1717338.1 chitin binding peritrophin-A domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005576|GO:0008061|GO:0016020
|
GO:0008150_0.962|GO:0065007_0.913|GO:0050789_0.906|GO:0005575_0.902|GO:0110165_0.902|GO:0009987_0.893|GO:0050794_0.891|GO:0032502_0.849|GO:0048856_0.848|GO:0048518_0.795|GO:0048522_0.792|GO:0030154_0.790|GO:0048869_0.790|GO:0048468_0.765|GO:0009653_0.731|GO:0051179_0.711|GO:0071944_0.711|GO:0032879_0.703|GO:0048646_0.698|GO:0022414_0.696|GO:0051641_0.695|GO:0003006_0.693|GO:0033036_0.687|GO:0070727_0.686|GO:0008104_0.684|GO:0019953_0.683|GO:0048609_0.683|GO:0060341_0.683|GO:0032880_0.681|GO:0007276_0.680|GO:0022412_0.678|GO:0007281_0.677|GO:0007292_0.675|GO:0048477_0.674|GO:0051668_0.674|GO:1903829_0.674|GO:1990778_0.673|GO:0030703_0.670|GO:0072657_0.670|GO:0072659_0.670|GO:0072697_0.670|GO:1903076_0.670|GO:1903078_0.670|GO:1904375_0.670|GO:1904377_0.670|GO:1904776_0.670|GO:1904778_0.670|GO:1905475_0.670|GO:1905477_0.670
|
IPR001190+239-367+|IPR002557+67-122_140-205_360-423_364-423_424-474_425-474_574-636_575-636_584-623_699-756_700-756_757-805_811-863_812-863_818-858_867-923_936-993_937-993_945-993+|IPR036508+357-425_577-623_701-755_812-865_943-993+|IPR051940+588-911+
|
SM00494+67-122_140-205_364-423_425-474_575-636_700-756_757-805_812-863_867-923_937-993+
|
PF01607+584-623_818-858_945-993+Chitin_binding_Peritrophin-A_domain
|
— |
PTHR23301+588-911+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-993
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.870
|
110388.750
|
7.687
|
20.000
|
26.385
|
11.078
|
47.231
|
52.769
|
14.703
|
11.682
|
55.086
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
skyblue
|
864.188
|
59.178
|
52.092
|
32.576
|
24.608
|
342.278
|
8925.697
|
87.721
|
54.957
|
168.048
|
119.581
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.417
|
-0.998
|
-0.566
|
— |
3.810
|
4.719
|
-2.079
|
6.818
|
— | — | — | — | — |