Hg_chrom5_TN10mRNA_10083
Organism: Heterodera glycines Gene Locus: chr5:5715160-5720394 Feature type: polypeptideProtein Sequence
Length: 1,168
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.528 | 1.473 | 0.95 | 0.679 | 0.785 | 1.142 | 0.571 | 1.627 | 0.875 | 1.064 | 0.61 | 1.108 | 1.332 | 1.367 | 1.468 | 1.651 | 0.968 | 0.921 | 0.527 | 1.083 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9490
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KRFELLNDGIASKIERR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.340
|
0.200
|
0.013
|
0.743
|
0.122
|
0.140
|
0.132
|
0.048
|
0.183
|
0.027
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009685
|
1.000
|
1.000
|
Hsc_gene_6893.t1
|
Hsc_gene_6893.t1
|
— |
Q70CQ4.2 Ubiquitin carboxyl-terminal hydrolase 31 [Homo sapiens]
|
KAI1725918.1 ubiquitin carboxyl-terminal hydrolase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004843|GO:0016579
|
GO:0008150_0.881|GO:0005575_0.820|GO:0110165_0.814|GO:0003674_0.735|GO:0005622_0.716|GO:0009987_0.618|GO:0016020_0.617|GO:0008152_0.609|GO:0043170_0.609|GO:0043226_0.594|GO:0003824_0.586|GO:0044238_0.584|GO:0140096_0.578|GO:0043229_0.568|GO:0016787_0.565|GO:0065007_0.563|GO:0050789_0.550|GO:0008233_0.548|GO:0019783_0.531|GO:0043227_0.507
|
IPR001394+368-976+|IPR018200+368-383_918-936+|IPR028889+367-979+|IPR038765+366-978+|IPR050185+102-982+
|
— |
PF00443+368-976+Ubiquitin_carboxyl-terminal_hydrolase
|
— |
PTHR21646+102-982+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-353;1044-1168
|
1.000
|
354-1043
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.928
|
132017.130
|
8.596
|
34.000
|
24.401
|
12.414
|
52.654
|
47.346
|
14.469
|
9.932
|
53.510
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1593.169
|
3402.153
|
2112.843
|
1550.047
|
1103.083
|
1949.159
|
1775.329
|
2859.986
|
1072.014
|
633.877
|
821.650
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.916
|
-1.271
|
-0.339
|
-0.522
|
0.836
|
— |
0.449
|
-0.546
|
— | — | — | — | — |
No JSON data available for plots.