SCN Proteipedia

Hg_chrom5_TN10mRNA_10085

Organism: Heterodera glycines Gene Locus: chr5:5725055-5727910 Feature type: polypeptide

Protein Sequence

Length: 468

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.795	1.292	0.932	0.884	0.855	1.644	0.661	0.962	1.092	1.415	1.068	1.257	1.246	1.274	0.741	1.526	0.595	0.745	0.164	0.628	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9492	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	16-Females_and_Males	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.612	0.107	0.009	0.478	0.116	0.108	0.109	0.015	0.082	0.025

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009687	1.000	1.000	Hsc_gene_6891.t1	Hsc_gene_6891.t1	—	O57406.1 CUGBP Elav-like family member 1-A [Xenopus laevis]	KAI1699051.1 RNA recognition motif domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003723	GO:0008150_0.938\|GO:0009987_0.866\|GO:0065007_0.793\|GO:0050789_0.786\|GO:0005575_0.781\|GO:0110165_0.779\|GO:0005622_0.716\|GO:0003674_0.680\|GO:0050794_0.667\|GO:0005488_0.653\|GO:0008152_0.633\|GO:0043170_0.633\|GO:0044237_0.619\|GO:0009058_0.618\|GO:0009059_0.618\|GO:0044249_0.618\|GO:0010467_0.612\|GO:0016020_0.601\|GO:0044238_0.591\|GO:0019222_0.582\|GO:0031323_0.582\|GO:0060255_0.568\|GO:0097159_0.562\|GO:0006139_0.561\|GO:0043226_0.561\|GO:0043229_0.561\|GO:0003676_0.556\|GO:0009889_0.555\|GO:0031326_0.555\|GO:0010468_0.552\|GO:0010556_0.552\|GO:0090304_0.551\|GO:0016070_0.548\|GO:0005737_0.536\|GO:0043227_0.525\|GO:0043231_0.522\|GO:0003723_0.515	IPR000504+33-114_34-110_36-102_120-199_121-195_122-187_379-457_380-453_381-451+\|IPR012677+21-115_116-207_364-463+\|IPR035979+25-112_118-459+	SM00360+34-110_121-195_380-453+	PF00076+36-102_122-187_381-451+RNA_recognition_motif	G3DSA:3.30.70.330:FF:000013+21-117+CUGBP_Elav-like_family_member_1_isoform_2\|G3DSA:3.30.70.330:FF:000383+366-458+Sex_lethal,_isoform_D	PTHR24012+24-459+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-20	1.000	21-468	9urh_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.878	51535.720	7.743	6.500	22.863	8.761	49.145	50.855	12.607	10.256	51.496

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkred	yellow	1085.393	963.483	1070.094	918.445	954.893	981.979	1351.036	1445.137	1031.771	1092.868	1066.683

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-0.206	-0.111	—	—	0.470	0.455	—	—	—	—	—	—

No JSON data available for plots.

Back to Browser