Hg_chrom5_TN10mRNA_10086
Organism: Heterodera glycines Gene Locus: chr5:5728091-5729830 Feature type: polypeptideProtein Sequence
Length: 336
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.969 | 1.107 | 0.541 | 0.718 | 0.496 | 1.145 | 0.602 | 0.744 | 0.794 | 1.448 | 0.812 | 2.276 | 1.736 | 1.145 | 0.972 | 1.105 | 1.025 | 1.263 | 1.832 | 0.788 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9493
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.525
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.086
|
0.888
|
0.101
|
0.224
|
0.175
|
0.226
|
0.142
|
0.091
|
0.087
|
0.071
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009688
|
1.000
|
1.000
|
Hsc_gene_6890.t1
|
Hsc_gene_6890.t1
|
— |
Q91V61.1 Sideroflexin-3 [Mus musculus]
|
KAH7730206.1 Sideroflexin 1 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006811|GO:0015075|GO:0016020|GO:0055085
|
GO:0005575_0.860|GO:0110165_0.860|GO:0016020_0.803|GO:0008150_0.768|GO:0005622_0.732|GO:0005737_0.720|GO:0043226_0.709|GO:0043227_0.693|GO:0043229_0.687|GO:0043231_0.683|GO:0009987_0.670|GO:0051179_0.553|GO:0006810_0.551|GO:0051234_0.551|GO:0003674_0.545|GO:0005739_0.530
|
IPR004686+11-301_11-302+
|
— |
PF03820+11-302+Sideroflexins
|
— |
PTHR11153+11-301+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-336
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.831
|
37673.020
|
9.973
|
16.500
|
17.560
|
12.798
|
40.774
|
59.226
|
11.607
|
5.952
|
51.488
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
1400.685
|
1602.350
|
1219.681
|
1166.220
|
1120.138
|
973.827
|
904.780
|
1279.933
|
1056.708
|
2235.367
|
1730.228
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.624
|
-0.595
|
— | — |
-0.187
|
— |
0.290
|
-0.359
|
— | — | — | — | — |
No JSON data available for plots.